Marine Microbes Amplicons 16S 102.100.100/34259 AW0LM
Dataset size is: 43.98 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2016-11-23 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
Related Data | doi:10.25953/z3tc-a185 |
absorbance_260_280_ratio_submitter | 1.79 |
absorbance_260_280_ratio_submitter_meth | meth_3.3.1 |
alkalinity (µmol/kg) | 2331.47 |
alkalinity_meth | meth_2.2 |
am_environment | Marine |
ammonium (µmol/L) | 1e-10 |
ammonium_meth | meth_2.2 |
amplicon | 16S |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2016-09-15 |
biotic_relationship | Free-living |
chlorophyll_ctd (mg/m3) | 0.3627 |
chlorophyll_ctd_meth | meth_2.2 |
collection_date | 2015-12-16T00:30:00 |
comments | 34259_1_16S_UNSW_CACGCCAT_ACGCGTGA_AW0LM |
conductivity_aqueous (S/m) | 5.3727 |
conductivity_aqueous_meth | meth_2.2 |
contextual_data_submission_date | 2016-07-19 |
data_generated | 2016-09-15 |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-8/ |
date_of_transfer | 2016-08-25 |
density (kg/m3) | 1023.9196 |
density_meth | meth_2.2 |
depth (m) | 30.0 |
depth_lower (m) | 30.0 |
depth_upper (m) | 30.0 |
description | MM |
dilution_used | Neat |
dna_concentration_submitter (ng/µL) | 7.232 |
dna_concentration_submitter_meth | meth_3.3.1 |
env_broad_scale | 7 Other |
env_local_scale | 7.2.1 Open ocean water-conservation |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
flow_id | AW0LM |
folder_name | 20160825_UNSW_BPA_MM_AW0LM |
funding_agency | IMOS|CSIRO |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Moreton Bay Marine Park [GAZ:00088305] |
imos_site_code | NRSNSI |
lat_lon (decimal_degrees) | -27.345 153.562 |
latitude (decimal_degrees) | -27.345 |
longitude (decimal_degrees) | 153.562 |
mm_amplicon_linkage | AW0LM |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_biosample_accession | SAMN07483270 |
nitrate (µmol/L) | 1e-10 |
nitrate_meth | meth_2.2 |
nrs_sample_code | NSI20151216_30 |
nrs_trip_code | NSI20151216 |
nucl_acid_ext | meth_3.1.9 |
omics | Genomics |
oxygen_ctd_vol (mL/L) | 202.1314 |
oxygen_ctd_vol_meth | meth_2.2 |
pass_fail | P |
phosphate (µmol/L) | 0.1 |
phosphate_meth | meth_2.2 |
read_length | 300bp |
reads | 115148.0 |
salinity (PSU) | 35.5666 |
salinity_lab (PSU) | 35.586 |
salinity_lab_meth | meth_2.2 |
salinity_meth | meth_2.2 |
samp_collect_device | meth_1.4 |
samp_mat_process | meth_1.4 |
samp_size (L) | 2.0 |
samp_vol_we_dna_ext (L) | 2.0 |
sample_attribution | IMOS|CSIRO |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_extraction_id | 34259_1 |
sample_id | 102.100.100/34259 |
sample_integrity_warnings | WARNING: Storage or transport conditions compromised |
sample_metadata_ingest_date | 2022-11-29 17:13:14 |
sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
sample_site_location_description | North Stradbroke Island |
sample_submission_date | 2016-08-25 |
sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
sample_type | Pelagic |
sample_volume_notes | Other - not recorded in field log sheets [assume 2 L as per protocol] |
secchi_depth (m) | 17.0 |
secchi_depth_meth | meth_2.2 |
silicate (µmol/L) | 0.5 |
silicate_meth | meth_2.2 |
source_mat_id | 102.100.100/34259 |
store_cond | meth_1.4 |
submitter | Jodie van de Kamp |
target | 16S |
temp (degC) | 24.887 |
temp_meth | meth_2.2 |
ticket | BPAOPS-8 |
total_co2 (µmol/kg) | 2016.49 |
total_co2_meth | meth_2.2 |
turbidity (NTU_or_FTU) | 0.2351 |
turbidity_meth | meth_2.2 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34259 |
utc_date_sampled | 2015-12-16 |
utc_time_sampled | 00:30:00 |
work_order | 8 |
zooplankton_biomass (mg/m3) | 14.5503 |
zooplankton_biomass_meth | meth_2.2int |