Marine Microbes Amplicons 16S 102.100.100/34256 ATNUK
Dataset size is: 47.80 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2016-11-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/z3tc-a185 |
| absorbance_260_280_ratio_submitter | 3.22 |
| absorbance_260_280_ratio_submitter_meth | meth_3.3.1 |
| alkalinity (µmol/kg) | 2334.23 |
| alkalinity_meth | meth_2.2 |
| am_environment | Marine |
| ammonium (µmol/L) | 1e-10 |
| ammonium_meth | meth_2.2 |
| amplicon | 16S |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2016-09-14 |
| biotic_relationship | Free-living |
| chlorophyll_ctd (mg/m3) | 0.1918 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2015-12-16T00:30:00 |
| comments | 34256_1_16S_UNSW_AATCCGTA_ACGCGTGA_ATNUK |
| conductivity_aqueous (S/m) | 5.5057 |
| conductivity_aqueous_meth | meth_2.2 |
| contextual_data_submission_date | 2016-07-19 |
| data_generated | 2016-09-14 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-7/ |
| date_of_transfer | 2016-08-25 |
| density (kg/m3) | 1023.3806 |
| density_meth | meth_2.2 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| description | MM |
| dilution_used | Neat |
| dna_concentration_submitter (ng/µL) | 7.758 |
| dna_concentration_submitter_meth | meth_3.3.1 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | ATNUK |
| folder_name | 20160825_UNSW_BPA_MM_ATNUK |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Moreton Bay Marine Park [GAZ:00088305] |
| imos_site_code | NRSNSI |
| lat_lon (decimal_degrees) | -27.345 153.562 |
| latitude (decimal_degrees) | -27.345 |
| longitude (decimal_degrees) | 153.562 |
| mm_amplicon_linkage | ATNUK |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN07483267 |
| nitrate (µmol/L) | 1e-10 |
| nitrate_meth | meth_2.2 |
| nrs_sample_code | NSI20151216_0 |
| nrs_trip_code | NSI20151216 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen_ctd_vol (mL/L) | 194.5231 |
| oxygen_ctd_vol_meth | meth_2.2 |
| pass_fail | P |
| phosphate (µmol/L) | 0.06 |
| phosphate_meth | meth_2.2 |
| read_length | 300bp |
| reads | 101232.0 |
| salinity (PSU) | 35.5327 |
| salinity_lab (PSU) | 35.54 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 34256_1 |
| sample_id | 102.100.100/34256 |
| sample_integrity_warnings | WARNING: Storage or transport conditions compromised |
| sample_metadata_ingest_date | 2022-11-29 17:13:14 |
| sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
| sample_site_location_description | North Stradbroke Island |
| sample_submission_date | 2016-08-25 |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| sample_volume_notes | Other - not recorded in field log sheets [assume 2 L as per protocol] |
| secchi_depth (m) | 17.0 |
| secchi_depth_meth | meth_2.2 |
| silicate (µmol/L) | 0.6 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/34256 |
| store_cond | meth_1.4 |
| submitter | Jodie van de Kamp |
| target | 16S |
| temp (degC) | 26.1951 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-7 |
| total_co2 (µmol/kg) | 1999.54 |
| total_co2_meth | meth_2.2 |
| turbidity (NTU_or_FTU) | 0.2081 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34256 |
| utc_date_sampled | 2015-12-16 |
| utc_time_sampled | 00:30:00 |
| work_order | 8 |
| zooplankton_biomass (mg/m3) | 14.5503 |
| zooplankton_biomass_meth | meth_2.2int |