Marine Microbes Amplicons 16S 102.100.100/34254 AW0LM

North Stradbroke Island, 16S MiSeq

Dataset size is: 31.68 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2016-11-23
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
absorbance_260_280_ratio_submitter 2.26
absorbance_260_280_ratio_submitter_meth meth_3.3.1
am_environment Marine
ammonium (µmol/L) 1e-10
ammonium_meth meth_2.2
amplicon 16S
analysis_software_version 2.6.2.3
analytical_platform MiSeq
archive_ingestion_date 2016-09-15
biotic_relationship Free-living
collection_date 2016-05-17T01:25:00
comments 34254_1_16S_UNSW_CAGGCGTA_CTAGTATG_AW0LM
contextual_data_submission_date 2016-07-19
data_generated 2016-09-15
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-8/
date_of_transfer 2016-08-25
depth (m) 40.0
depth_lower (m) 40.0
depth_upper (m) 40.0
description MM
dilution_used Neat
dna_concentration_submitter (ng/µL) 10.26
dna_concentration_submitter_meth meth_3.3.1
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
flow_id AW0LM
folder_name 20160825_UNSW_BPA_MM_AW0LM
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Moreton Bay Marine Park [GAZ:00088305]
imos_site_code NRSNSI
lat_lon (decimal_degrees) -27.345 153.562
latitude (decimal_degrees) -27.345
longitude (decimal_degrees) 153.562
mm_amplicon_linkage AW0LM
ncbi_bioproject_accession PRJNA385736
ncbi_biosample_accession SAMN07483265
nitrate (µmol/L) 0.6
nitrate_meth meth_2.2
nitrite (µmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code NSI20160517_40
nrs_trip_code NSI20160517
nucl_acid_ext meth_3.1.9
omics Genomics
pass_fail P
phosphate (µmol/L) 0.12
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 4104.5
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 48267.5
prochlorococcus_meth meth_2.2int
read_length 300bp
reads 76121.0
salinity_lab (PSU) 35.691
salinity_lab_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_extraction_id 34254_1
sample_id 102.100.100/34254
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description North Stradbroke Island
sample_submission_date 2016-08-25
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 29.0
secchi_depth_meth meth_2.2
silicate (µmol/L) 0.8
silicate_meth meth_2.2
source_mat_id 102.100.100/34254
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 13588.5
synechococcus_meth meth_2.2int
target 16S
ticket BPAOPS-8
tss (mg/L) 1.1
tss_meth meth_2.2int
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34254
utc_date_sampled 2016-05-17
utc_time_sampled 01:25:00
work_order 8
zooplankton_biomass (mg/m3) 9.9017
zooplankton_biomass_meth meth_2.2int