Marine Microbes Amplicons 16S 102.100.100/34226 AW0LM
Dataset size is: 36.79 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2016-11-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/z3tc-a185 |
| absorbance_260_280_ratio_submitter | 1.95 |
| absorbance_260_280_ratio_submitter_meth | meth_3.3.1 |
| am_environment | Marine |
| ammonium (µmol/L) | 0.14 |
| ammonium_meth | meth_2.2 |
| amplicon | 16S |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2016-09-15 |
| biotic_relationship | Free-living |
| chlorophyll_ctd (mg/m3) | 0.7099 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2016-02-23T21:25:00 |
| comments | 34226_1_16S_UNSW_TAGGATTG_CTAGTATG_AW0LM |
| conductivity_aqueous (S/m) | 4.7992 |
| conductivity_aqueous_meth | meth_2.2 |
| contextual_data_submission_date | 2016-07-19 |
| data_generated | 2016-09-15 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-8/ |
| date_of_transfer | 2016-08-25 |
| density (kg/m3) | 1025.8823 |
| density_meth | meth_2.2 |
| depth (m) | 20.0 |
| depth_lower (m) | 20.0 |
| depth_upper (m) | 20.0 |
| description | MM |
| dilution_used | Neat |
| dna_concentration_submitter (ng/µL) | 16.88 |
| dna_concentration_submitter_meth | meth_3.3.1 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | AW0LM |
| folder_name | 20160825_UNSW_BPA_MM_AW0LM |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Australian Bight [GAZ:00045604] |
| imos_site_code | NRSKAI |
| lat_lon (decimal_degrees) | -35.8322 136.4473 |
| latitude (decimal_degrees) | -35.8322 |
| longitude (decimal_degrees) | 136.4473 |
| mm_amplicon_linkage | AW0LM |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN07483237 |
| nitrate (µmol/L) | 1e-10 |
| nitrate_meth | meth_2.2 |
| nrs_sample_code | KAI20160223_20 |
| nrs_trip_code | KAI20160223 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen_ctd_vol (mL/L) | 181.9951 |
| oxygen_ctd_vol_meth | meth_2.2 |
| pass_fail | P |
| phosphate (µmol/L) | 0.07 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 9723.0 |
| picoeukaryotes_meth | meth_2.2int |
| prochlorococcus (cells/mL) | 11009.0 |
| prochlorococcus_meth | meth_2.2int |
| read_length | 300bp |
| reads | 91137.0 |
| salinity (PSU) | 35.9815 |
| salinity_lab (PSU) | 35.843 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 34226_1 |
| sample_id | 102.100.100/34226 |
| sample_metadata_ingest_date | 2022-11-29 17:13:14 |
| sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
| sample_metadata_update_history | AODN_AM_NRS_202303010911_FullREPLACE_xlsx;AODN_AM_NRS_202304260934_FullREPLACE_xlsx |
| sample_site_location_description | Kangaroo Island |
| sample_submission_date | 2016-08-25 |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| sample_volume_notes | Other - not recorded in field log sheets [assume 2 L as per protocol] |
| silicate (µmol/L) | 1.0 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/34226 |
| store_cond | meth_1.4 |
| submitter | Jodie van de Kamp |
| synechococcus (cells/mL) | 33099.0 |
| synechococcus_meth | meth_2.2int |
| target | 16S |
| temp (degC) | 18.911 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-8 |
| tss (mg/L) | 3.5 |
| tss_meth | meth_2.2int |
| turbidity (NTU_or_FTU) | 0.3291 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34226 |
| utc_date_sampled | 2016-02-23 |
| utc_time_sampled | 21:25:00 |
| work_order | 8 |
| zooplankton_biomass (mg/m3) | 14.2372 |
| zooplankton_biomass_meth | meth_2.2int |