Marine Microbes Amplicons 16S 102.100.100/34221 AW0LM
Dataset size is: 42.77 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2016-11-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/z3tc-a185 |
| absorbance_260_280_ratio_submitter | 2.18 |
| absorbance_260_280_ratio_submitter_meth | meth_3.3.1 |
| alkalinity (µmol/kg) | 2215.21 |
| alkalinity_meth | meth_2.2 |
| am_environment | Marine |
| ammonium (µmol/L) | 0.51 |
| ammonium_meth | meth_2.2 |
| amplicon | 16S |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| archive_ingestion_date | 2016-09-15 |
| biotic_relationship | Free-living |
| chlorophyll_ctd (mg/m3) | 0.5963 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2016-02-02T06:30:00 |
| comments | 34221_1_16S_UNSW_GTTGGTCA_GTCTAGTG_AW0LM |
| conductivity_aqueous (S/m) | 5.6966 |
| conductivity_aqueous_meth | meth_2.2 |
| contextual_data_submission_date | 2016-07-19 |
| data_generated | 2016-09-15 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-8/ |
| date_of_transfer | 2016-08-25 |
| density (kg/m3) | 1020.5634 |
| density_meth | meth_2.2 |
| depth (m) | 10.0 |
| depth_lower (m) | 10.0 |
| depth_upper (m) | 10.0 |
| description | MM |
| dilution_used | Neat |
| dna_concentration_submitter (ng/µL) | 19.21 |
| dna_concentration_submitter_meth | meth_3.3.1 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| facility | RAMACIOTTI |
| flow_id | AW0LM |
| folder_name | 20160825_UNSW_BPA_MM_AW0LM |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Beagle Gulf [GAZ:00051048] |
| imos_site_code | NRSDAR |
| lat_lon (decimal_degrees) | -12.4 130.768 |
| latitude (decimal_degrees) | -12.4 |
| longitude (decimal_degrees) | 130.768 |
| mm_amplicon_linkage | AW0LM |
| ncbi_bioproject_accession | PRJNA385736 |
| ncbi_biosample_accession | SAMN07483232 |
| nitrate (µmol/L) | 0.2 |
| nitrate_meth | meth_2.2 |
| nrs_sample_code | DAR20160202_0630_10 |
| nrs_trip_code | DAR20160202_0630 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| phosphate (µmol/L) | 0.06 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 6423.5 |
| picoeukaryotes_meth | meth_2.2int |
| prochlorococcus (cells/mL) | 3747.0 |
| prochlorococcus_meth | meth_2.2int |
| read_length | 300bp |
| reads | 104948.0 |
| salinity (PSU) | 33.6563 |
| salinity_lab (PSU) | 33.66 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| samp_size (L) | 1.0 |
| samp_vol_we_dna_ext (L) | 1.0 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_extraction_id | 34221_1 |
| sample_id | 102.100.100/34221 |
| sample_metadata_ingest_date | 2022-11-29 17:13:14 |
| sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
| sample_site_location_description | Darwin |
| sample_submission_date | 2016-08-25 |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| sample_volume_notes | High biomass/particulate matter |
| secchi_depth (m) | 2.0 |
| secchi_depth_meth | meth_2.2 |
| silicate (µmol/L) | 1.4 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/34221 |
| store_cond | meth_1.4 |
| submitter | Jodie van de Kamp |
| synechococcus (cells/mL) | 94628.5 |
| synechococcus_meth | meth_2.2int |
| target | 16S |
| temp (degC) | 30.578 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-8 |
| total_co2 (µmol/kg) | 1940.73 |
| total_co2_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34221 |
| utc_date_sampled | 2016-02-02 |
| utc_time_sampled | 06:30:00 |
| work_order | 8 |