Marine Microbes Amplicons 16S 102.100.100/34219 ATNUK

Darwin, 16S MiSeq

Dataset size is: 26.63 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2016-11-23
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
absorbance_260_280_ratio_submitter 2.3
absorbance_260_280_ratio_submitter_meth meth_3.3.1
alkalinity (µmol/kg) 2206.52
alkalinity_meth meth_2.2
allo (mg/m3) 0.028
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.046
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (µmol/L) 0.43
ammonium_meth meth_2.2
amplicon 16S
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2016-09-14
asta (mg/m3) 1e-10
asta_meth meth_2.2
biotic_relationship Free-living
but_fuco (mg/m3) 1e-10
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.816
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.054
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 0.024
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.06
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 1e-10
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.4964
chlorophyll_ctd_meth meth_2.2
collection_date 2016-02-01T21:30:00
comments 34219_1_16S_UNSW_GTACATAC_ACGCGTGA_ATNUK
conductivity_aqueous (S/m) 5.6771
conductivity_aqueous_meth meth_2.2
contextual_data_submission_date 2016-07-19
cphlide_a (mg/m3) 1e-10
cphlide_a_meth meth_2.2
data_generated 2016-09-14
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-7/
date_of_transfer 2016-08-25
density (kg/m3) 1020.3531
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MM
diadchr (mg/m3) 1e-10
diadchr_meth meth_2.2
diadino (mg/m3) 0.021
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used Neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dna_concentration_submitter (ng/µL) 28.94
dna_concentration_submitter_meth meth_3.3.1
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.816
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.054
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
flow_id ATNUK
folder_name 20160825_UNSW_BPA_MM_ATNUK
fuco (mg/m3) 0.25
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Beagle Gulf [GAZ:00051048]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.012
hex_fuco_meth meth_2.2
imos_site_code NRSDAR
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -12.4 130.768
latitude (decimal_degrees) -12.4
longitude (decimal_degrees) 130.768
lut (mg/m3) 1e-10
lut_meth meth_2.2
lyco (mg/m3) 1e-10
lyco_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
mm_amplicon_linkage ATNUK
ncbi_bioproject_accession PRJNA385736
ncbi_biosample_accession SAMN07483230
neo (mg/m3) 0.005
neo_meth meth_2.2
nitrate (µmol/L) 0.2
nitrate_meth meth_2.2
nrs_sample_code DAR20160201_2130_0
nrs_trip_code DAR20160201_2130
nucl_acid_ext meth_3.1.9
omics Genomics
pass_fail P
perid (mg/m3) 0.027
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (µmol/L) 0.2
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 5325.0
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.021
pras_meth meth_2.2
prochlorococcus (cells/mL) 1887.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 300bp
reads 52615.0
salinity (PSU) 33.46
salinity_lab (PSU) 33.465
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 1.0
samp_vol_we_dna_ext (L) 1.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_extraction_id 34219_1
sample_id 102.100.100/34219
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Darwin
sample_submission_date 2016-08-25
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes High biomass/particulate matter
secchi_depth (m) 1.5
secchi_depth_meth meth_2.2
silicate (µmol/L) 1.1
silicate_meth meth_2.2
source_mat_id 102.100.100/34219
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 84900.0
synechococcus_meth meth_2.2int
target 16S
temp (degC) 30.6781
temp_meth meth_2.2
ticket BPAOPS-7
total_co2 (µmol/kg) 1938.21
total_co2_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/34219
utc_date_sampled 2016-02-01
utc_time_sampled 21:30:00
viola (mg/m3) 0.004
viola_meth meth_2.2
work_order 8
zea (mg/m3) 0.06
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 20.3928
zooplankton_biomass_meth meth_2.2int