Marine Microbes Amplicons 16S 102.100.100/27473 AHG7M

Port Hacking, 16S MiSeq

Dataset size is: 71.99 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2015-04-01
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
absorbance_260_280_ratio_submitter 1.33
absorbance_260_280_ratio_submitter_meth meth_3.3.1
alkalinity (µmol/kg) 2320.14
alkalinity_meth meth_2.2
am_environment Marine
ammonium (µmol/L) 0.06
ammonium_meth meth_2.2
amplicon 16S
analysis_software_version 2.6.2.3
analytical_platform MiSeq
archive_ingestion_date 2015-01-01
biotic_relationship Free-living
chlorophyll_ctd (mg/m3) 0.4025
chlorophyll_ctd_meth meth_2.2
collection_date 2013-12-02T22:30:00
comments 27473_AHG7M
conductivity_aqueous (S/m) 4.3276
conductivity_aqueous_meth meth_2.2
data_generated 2015-01-01
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-363/
date_of_transfer 2015-01-01
density (kg/m3) 1026.5565
density_meth meth_2.2
depth (m) 75.0
depth_lower (m) 75.0
depth_upper (m) 75.0
description MM
dilution_used neat
dna_concentration_submitter (ng/µL) 2.185
dna_concentration_submitter_meth meth_3.3.1
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
flow_id AHG7M
folder_name 20171020_UNSW_EXTERNAL_BPAOPS363
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
imos_site_code NRSPHB
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
longitude (decimal_degrees) 151.2267
mm_amplicon_linkage AHG7M
ncbi_bioproject_accession PRJNA385736
ncbi_biosample_accession SAMN08364268
nitrate (µmol/L) 9.5
nitrate_meth meth_2.2
nrs_sample_code PHB20131202_75
nrs_trip_code PHB20131202
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 180.9001
oxygen_ctd_vol_meth meth_2.2
pass_fail P
phosphate (µmol/L) 0.7
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 7376.5
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 12070.0
prochlorococcus_meth meth_2.2int
read_length 300bp
salinity (PSU) 35.3234
salinity_lab (PSU) 35.375
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_extraction_id 27473_1
sample_id 102.100.100/27473
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Port Hacking
sample_submission_date 2015-01-01
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 18.0
secchi_depth_meth meth_2.2
silicate (µmol/L) 3.1
silicate_meth meth_2.2
source_mat_id 102.100.100/27473
store_cond meth_1.4
synechococcus (cells/mL) 21556.5
synechococcus_meth meth_2.2int
target 16S
temp (degC) 14.97
temp_meth meth_2.2
ticket BPAOPS-363
total_co2 (µmol/kg) 2110.32
total_co2_meth meth_2.2
tss (mg/L) 0.6
tss_meth meth_2.2int
turbidity (NTU_or_FTU) 0.0667
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/27473
utc_date_sampled 2013-12-02
utc_time_sampled 22:30:00
zooplankton_biomass (mg/m3) 3.1296
zooplankton_biomass_meth meth_2.2int