Marine Microbes Amplicons 16S 102.100.100/27119 AHGA0
Dataset size is: 45.25 MiB
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
Access Control Date | 2015-04-01 |
Access Control Mode | date |
Sequence Data Type | illumina-amplicons |
Related Data | doi:10.25953/z3tc-a185 |
absorbance_260_280_ratio_submitter | 2.1 |
absorbance_260_280_ratio_submitter_meth | meth_3.3.1 |
alkalinity (μmol/kg) | 2324.3 |
alkalinity_meth | meth_2.2 |
am_environment | Marine |
ammonium (μmol/L) | 0.08 |
ammonium_meth | meth_2.2 |
amplicon | 16S |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
archive_ingestion_date | 2015-01-01 |
bioplatforms_dataset_id | 102.100.100/401949 |
bioplatforms_project | Marine Microbes Project (MM) |
bioplatforms_project_code | AM_NRS |
biotic_relationship | Free-living |
chlorophyll_ctd (mg/m3) | 0.2866 |
chlorophyll_ctd_meth | meth_2.2 |
collection_date | 2014-05-16T00:20:00 |
comments | 27119_AHGA0 |
conductivity_aqueous (S/m) | 4.3348 |
conductivity_aqueous_meth | meth_2.2 |
data_generated | 2015-01-01 |
data_type | 16S |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_id | 102.100.100/401949 |
dataset_url | https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BPAOPS-363/ |
date_of_transfer | 2015-01-01 |
density (kg/m3) | 1026.4766 |
density_meth | meth_2.2 |
depth (m) | 50.0 |
depth_lower (m) | 50.0 |
depth_upper (m) | 50.0 |
description | MM |
dilution_used | neat |
dna_concentration_submitter (ng/μL) | 8.183 |
dna_concentration_submitter_meth | meth_3.3.1 |
env_broad_scale | 7 Other |
env_local_scale | 7.2.1 Open ocean water-conservation |
env_medium | Sea water [ENVO_00002149] |
facility | RAMACIOTTI |
flow_id | AHGA0 |
folder_name | 20171020_UNSW_EXTERNAL_BPAOPS363 |
funding_agency | IMOS|CSIRO |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Tasman Sea coastal waters of continental Australia [GAZ_00143737] |
imos_site_code | NRSMAI |
lat_lon (decimal_degrees) | -42.5967 148.2333 |
latitude (decimal_degrees) | -42.5967 |
longitude (decimal_degrees) | 148.2333 |
mm_amplicon_linkage | AHGA0 |
ncbi_bioproject_accession | PRJNA385736 |
ncbi_bioproject_accession_number | PRJNA385736 |
ncbi_biosample_accession | SAMN08363914 |
ncbi_biosample_accession_number | SAMN08363914 |
nitrate (μmol/L) | 2.9 |
nitrate_meth | meth_2.2 |
nrs_sample_code | MAI20140516_50 |
nrs_trip_code | MAI20140516 |
nucl_acid_ext | meth_3.1.9 |
omics | Genomics |
oxygen (μmol/L) | 246.7 |
oxygen_ctd_vol (mL/L) | 246.3992 |
oxygen_ctd_vol_meth | meth_2.2 |
oxygen_meth | meth_2.2 |
pass_fail | P |
phosphate (μmol/L) | 0.28 |
phosphate_meth | meth_2.2 |
picoeukaryotes (cells/mL) | 3423.0 |
picoeukaryotes_meth | meth_2.2int |
prochlorococcus (cells/mL) | 5864.5 |
prochlorococcus_meth | meth_2.2int |
read_length | 300bp |
salinity (PSU) | 35.3663 |
salinity_lab (PSU) | 35.358 |
salinity_lab_meth | meth_2.2 |
salinity_meth | meth_2.2 |
samp_collect_device | meth_1.4 |
samp_mat_process | meth_1.4 |
samp_size (L) | 2.0 |
samp_vol_we_dna_ext (L) | 2.0 |
sample_attribution | IMOS|CSIRO |
sample_database_file | AM_db_v4.2_202408091431.db |
sample_extraction_id | 27119_1 |
sample_id | 102.100.100/27119 |
sample_metadata_ingest_date | 2022-11-29 17:13:14 |
sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
sample_site_location_description | Maria Island |
sample_submission_date | 2015-01-01 |
sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
sample_type | Pelagic |
sample_volume_notes | Other - not recorded in field log sheets [assume 2 L as per protocol] |
secchi_depth (m) | 13.0 |
secchi_depth_meth | meth_2.2 |
silicate (μmol/L) | 0.8 |
silicate_meth | meth_2.2 |
source_mat_id | 102.100.100/27119 |
store_cond | meth_1.4 |
synechococcus (cells/mL) | 19735.0 |
synechococcus_meth | meth_2.2int |
target | 16S |
temp (degC) | 15.0065 |
temp_meth | meth_2.2 |
ticket | BPAOPS-363 |
total_co2 (μmol/kg) | 2081.62 |
total_co2_meth | meth_2.2 |
tss (mg/L) | 0.7 |
tss_meth | meth_2.2int |
turbidity (NTU) | 0.2042 |
turbidity_meth | meth_2.2 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/27119 |
utc_date_sampled | 2014-05-16 |
utc_time_sampled | 00:20:00 |
zooplankton_biomass (mg/m3) | 7.835 |
zooplankton_biomass_meth | meth_2.2int |