Marine Microbes Amplicons 16S 102.100.100/21870 APE54

Rottnest Island, 16S MiSeq

Dataset size is: 28.86 MiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2016-08-25
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (µmol/kg) 2335.01
alkalinity_meth meth_2.2
allo (mg/m3) 0.002
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.009
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (µmol/L) 0.13
ammonium_meth meth_2.2
amplicon 16S
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
archive_ingestion_date 2016-05-30
asta (mg/m3) 1e-10
asta_meth meth_2.2
biotic_relationship Free-living
but_fuco (mg/m3) 0.012
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.103
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.013
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.018
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.01
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.1552
chlorophyll_ctd_meth meth_2.2
collection_date 2015-09-24T02:08:00
comments A:9
conductivity_aqueous (S/m) 4.7552
conductivity_aqueous_meth meth_2.2
contextual_data_submission_date 2016-02-15
cphlide_a (mg/m3) 0.008
cphlide_a_meth meth_2.2
data_generated 2016-05-30
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BRLOPS-813/
date_of_transfer 2016-05-27
density (kg/m3) 1025.5492
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
description MM
diadchr (mg/m3) 1e-10
diadchr_meth meth_2.2
diadino (mg/m3) 0.012
diadino_meth meth_2.2
diato (mg/m3) 0.001
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 0.035
dv_cphl_a_and_cphl_a (mg/m3) 0.138
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.013
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
flow_id APE54
folder_name 20160527_UNSW_BPA_MM_APE54
fuco (mg/m3) 0.019
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ:00051147]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.023
hex_fuco_meth meth_2.2
imos_site_code NRSROT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
lut (mg/m3) 1e-10
lut_meth meth_2.2
lyco (mg/m3) 1e-10
lyco_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
mm_amplicon_linkage APE54
ncbi_bioproject_accession PRJNA385736
ncbi_biosample_accession SAMN07483452
neo (mg/m3) 0.002
neo_meth meth_2.2
nitrate (µmol/L) 1e-10
nitrate_meth meth_2.2
nrs_sample_code ROT20150924_20
nrs_trip_code ROT20150924
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 228.9618
oxygen_ctd_vol_meth meth_2.2
pass_fail P
perid (mg/m3) 0.004
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (µmol/L) 1e-10
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 9432.5
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.004
pras_meth meth_2.2
prochlorococcus (cells/mL) 2568.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 300bp
reads 71319.0
salinity (PSU) 35.5642
salinity_lab (PSU) 35.578
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_extraction_id 21870_1
sample_id 102.100.100/21870
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Rottnest Island
sample_submission_date 2016-05-27
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 19.0
secchi_depth_meth meth_2.2
source_mat_id 102.100.100/21870
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 12005.5
synechococcus_meth meth_2.2int
target 16S
temp (degC) 18.966
temp_meth meth_2.2
ticket BRLOPS-813
total_co2 (µmol/kg) 2043.85
total_co2_meth meth_2.2
turbidity (NTU_or_FTU) 0.0695
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/21870
utc_date_sampled 2015-09-24
utc_time_sampled 02:08:00
viola (mg/m3) 0.002
viola_meth meth_2.2
work_order 3
zea (mg/m3) 0.051
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 5.2416
zooplankton_biomass_meth meth_2.2int