Marine Microbes Amplicons 16S 102.100.100/21856 AL0YY

Port Hacking, 16S MiSeq

Dataset size is: 60.72 MiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2016-05-15
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (µmol/kg) 2334.04
alkalinity_meth meth_2.2
allo (mg/m3) 0.028
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.023
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (µmol/L) 0.19
ammonium_meth meth_2.2
amplicon 16S
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 0.003
anth_meth meth_2.2
archive_ingestion_date 2016-02-15
asta (mg/m3) 1e-10
asta_meth meth_2.2
biotic_relationship Free-living
but_fuco (mg/m3) 0.066
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.624
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.088
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.09
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.062
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 2.0339
chlorophyll_ctd_meth meth_2.2
collection_date 2015-06-30T01:11:00
comments G:2
conductivity_aqueous (S/m) 4.824
conductivity_aqueous_meth meth_2.2
contextual_data_submission_date 2015-10-07
cphlide_a (mg/m3) 0.016
cphlide_a_meth meth_2.2
data_generated 2016-02-15
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_url https://downloads-qcif.bioplatforms.com/bpa/marine_microbes/raw/amplicons/16s/ramaciotti/BRLOPS-767/
date_of_transfer 2016-02-15
density (kg/m3) 1025.3362
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MM
diadchr (mg/m3) 1e-10
diadchr_meth meth_2.2
diadino (mg/m3) 0.019
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used Neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.624
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.088
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
facility RAMACIOTTI
flow_id AL0YY
folder_name 20160215_UNSW_BPA_MM_AL0YY
fuco (mg/m3) 0.061
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.132
hex_fuco_meth meth_2.2
imos_site_code NRSPHB
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
longitude (decimal_degrees) 151.2267
lut (mg/m3) 1e-10
lut_meth meth_2.2
lyco (mg/m3) 1e-10
lyco_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
mm_amplicon_linkage AL0YY
ncbi_bioproject_accession PRJNA385736
ncbi_biosample_accession SAMN07483438
neo (mg/m3) 0.009
neo_meth meth_2.2
nitrate (µmol/L) 0.8
nitrate_meth meth_2.2
nrs_sample_code PHB20150630_0
nrs_trip_code PHB20150630
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 218.4643
oxygen_ctd_vol_meth meth_2.2
pass_fail P
perid (mg/m3) 0.01
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (µmol/L) 0.16
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 7446.0
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.021
pras_meth meth_2.2
prochlorococcus (cells/mL) 4248.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
read_length 300bp
reads 133174.0
salinity (PSU) 35.6072
salinity_lab (PSU) 35.613
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_extraction_id 21856_1
sample_id 102.100.100/21856
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Port Hacking
sample_submission_date 2016-02-15
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 17.0
secchi_depth_meth meth_2.2
silicate (µmol/L) 1.0
silicate_meth meth_2.2
source_mat_id 102.100.100/21856
store_cond meth_1.4
submitter Jodie van de Kamp
synechococcus (cells/mL) 12802.0
synechococcus_meth meth_2.2int
target 16S
temp (degC) 19.5935
temp_meth meth_2.2
ticket BRLOPS-767
total_co2 (µmol/kg) 2034.03
total_co2_meth meth_2.2
turbidity (NTU_or_FTU) 0.0656
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/21856
utc_date_sampled 2015-06-30
utc_time_sampled 01:11:00
viola (mg/m3) 0.006
viola_meth meth_2.2
work_order 3
zea (mg/m3) 0.024
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 2.9564
zooplankton_biomass_meth meth_2.2int