Grasslands PacBio-HiFi, Reference genomes, Sample ID 369564
Dataset size is: 53.46 GiB
This dataset is currently under a short embargo period until December 31, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:grassland-consortium-members |
| Access Control Date | 2025-12-31 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| Related Data | PacBio-HiFi |
| analysis_software | 13.0.0.208615 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/grasslands/pacbio-hifi/BPAOPS-1547/20231208_AG_BRF_m84118_231208_115614_s4/ |
| bioplatforms_project | Australian Grasslands Initiative (AG) |
| cell_postion | 1_D01 |
| collected_by | Rachael Gallagher |
| collection_date | 2021-06-16 |
| common_name | Kangaroo grass |
| country | Australia |
| data_context | Reference genomes |
| data_type | Main dataset |
| dataset_id | 102.100.100/373564 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1547 |
| date_data_published | 04/01/2024 |
| date_of_transfer | 2023-12-20 |
| date_of_transfer_to_archive | 2023-12-22 |
| decimal_latitude_public | -33.39 |
| decimal_longitude_public | 151.33 |
| description | PacBio-HiFi |
| dna_treatment | Blue pippin size selection during library prep |
| facility | BRF |
| facility_sample_id | PacBio_WGS16_591_lib |
| family | Poaceae |
| fast5_compression | NA |
| flowcell_id | m84118_231208_115614_s4 |
| flowcell_type | Revio SMRT Cells |
| folder_name | 20231208_AG_BRF_m84118_231208_115614_s4 |
| growth_facility | Macquarie University Plant Growth facility |
| id_vetting_by | Karen |
| initiative_prefix | Grasslands |
| insert_size_range | 19182.0 |
| latitude | -33.39 |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/371564 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq | NA |
| library_index_seq_dual | NA |
| library_layout | NA |
| library_location | BRF fridge 0214 |
| library_ng_ul | 59.5 |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2023-12-08 |
| library_prepared_by | Carolina Correa-Ospina |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | HiFi |
| location_id | Narara |
| longitude | 151.33 |
| metadata_revision_date | 2024-12-16 |
| metadata_revision_filename | Australian_grasslands_metadata_combined_2024-12-12_forQCIF.xlsx |
| model_base_caller | NA |
| movie_length | 30h |
| n_libraries_pooled | NA |
| plant_developmental_stage | Floret emergence |
| plant_growth_medium | Standard MQ loam |
| ploidy | 2n |
| project_aim | Reference genomes |
| sample_id | 102.100.100/369564 |
| sample_replicate | NA |
| sample_submitter_name | Ashley Jones |
| scientific_name | Themeda triandra |
| scientific_name_authorship | Forssk |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_kit_chemistry_version | SMRT Link |
| sequencing_model | Revio |
| sequencing_platform | PACBIO |
| state_or_territory | NSW |
| taxon_id | 106636 |
| team_lead_email | brian.atwell@mq.edu.au |
| team_lead_name | Brian Atwell |
| ticket | BPAOPS-1547 |