Grasslands Illumina short read, Reference genomes, Sample ID 369598
Dataset size is: 23.73 GiB
This dataset is currently under a short embargo period until December 13, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:grassland-consortium-members |
| Access Control Date | 2025-12-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| accession_number_seed | APG 65490 |
| analysis_software | NovaSeq X Control Software v1.2.2.48004; Real Time Analysis v4.6.7; Dragen BCL Convert v07.021.645.4.0.3 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/grasslands/illumina-shortread/BPAOPS-1731/20241213_AG_AGRF_CAGRF24050423_2_22VGHWLT3/ |
| bioplatforms_project | Australian Grasslands Initiative (AG) |
| ccg_jira_ticket | BPAOPS-1731 |
| collected_by | Tasmanian Institute of Agricultural Science |
| common_name | Kangaroo grass |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 373574 |
| date_of_transfer | 2024-12-13 |
| date_of_transfer_to_archive | 2024-12-16 |
| decimal_latitude_public | -41.646172 |
| decimal_longitude_public | 147.328764 |
| description | Illumina short read |
| facility | AGRF |
| facility_project_code | CAGRF24050423-2 |
| facility_sample_id | 17935-1 |
| family | Poaceae |
| flowcell_id | 22VGHWLT3 |
| flowcell_type | 10B-300 |
| folder_name | 20241213_AG_AGRF_CAGRF24050423_2_22VGHWLT3 |
| growth_facility | University of Tasmania Glasshouses |
| initiative_prefix | Grasslands |
| insert_size_range | 593.0 |
| latitude | -41.646172 |
| library_construction_protocol | Illumina DNA PCR-Free |
| library_id | 371794 |
| library_index_seq_dual | UDP0001-F & UDP0001-R |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 6.33 |
| library_oligo_sequence_dual | GAACTGAGCG-TCGTGGAGCG |
| library_prep_date | 2024-11-26 |
| library_prepared_by | EB |
| library_source | DNA |
| library_strategy | Whole-genome Sequencing |
| library_type | WGS |
| location_id | Nile |
| longitude | 147.328764 |
| metadata_revision_date | 2024-12-16 |
| metadata_revision_filename | Australian_grasslands_metadata_combined_2024-12-12_forQCIF.xlsx |
| plant_developmental_stage | Vegetative |
| plant_growth_medium | Soil & Potting Mix |
| plant_structure | Tussock Grass |
| ploidy | 2n |
| preservation_storage_location | University of Tasmania |
| preservation_temperature | -80°C |
| preservation_type | stored in nuclease free water |
| project_aim | Reference genomes |
| sample_id | 102.100.100/369598 |
| sample_material_preparation_process | CTAB extraction with RNAse treatment |
| sample_material_preparation_type | DNA |
| sample_material_prepared_by | Jazmine Humphreys | Alejandro Correa Lozano | University of Tasmania |
| scientific_name | Themeda triandra |
| scientific_name_authorship | Forssk |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | XLEAP SBS |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| state_or_territory | TAS |
| taxon_id | 106636 |
| team_lead_email | brian.atwell@mq.edu.au |
| team_lead_name | Brian Atwell |
| ticket | BPAOPS-1731 |