Grasslands Illumina Short Read, Transcriptomics-RNASeq, Sample ID 369650
Dataset size is: 7.30 GiB
This dataset is currently under a short embargo period until February 1, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
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369650_LibID371652_AG_22HYWKLT3_... Metadata Only FASTQ
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:grassland-consortium-members |
| Access Control Date | 2025-02-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| accession_number_seed | ? |
| analysis_software | BCL Convert v4.1.7 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/grasslands/illumina-shortread/BPAOPS-1555/20240129_AG_UNSW_22HYWKLT3/ |
| bioplatforms_project | Australian Grasslands Initiative (AG) |
| ccg_jira_ticket | BPAOPS-1555 |
| collected_by | Brian Atwell |
| common_name | Kangaroo grass |
| country | Australia |
| data_context | Transcriptomics |
| data_type | Main dataset |
| dataset_id | 373569 |
| date_of_transfer | 2024-02-02 |
| date_of_transfer_to_archive | 2024-02-06 |
| decimal_latitude_public | -33.68810173 |
| decimal_longitude_public | 151.0624105 |
| description | Illumina Short Read |
| experimental_notes | Replicate-a |
| facility | RAMAC |
| facility_sample_id | ATW12889A84 |
| family | Poaceae |
| flowcell_id | 22HYWKLT3 |
| flowcell_type | 10B 200c |
| folder_name | 20240129_AG_UNSW_22HYWKLT3 |
| growth_condition | High_Temperature |
| growth_facility | Macquarie University Glasshouses |
| initiative_prefix | Grasslands |
| insert_size_range | 100 PE |
| latitude | -33.68810173 |
| library_construction_protocol | Illumina TruSeq |
| library_id | 371652 |
| library_index_id | UDI0084 |
| library_index_id_dual | UDI0084D11 |
| library_index_seq | TCATCCTT |
| library_index_seq_dual | AGCTCGCT |
| library_layout | Paired-end |
| library_location | RAMACIOTTI |
| library_ng_ul | 18.8 |
| library_pcr_cycles | 11 |
| library_pcr_reps | 1 |
| library_prep_date | 2024-01-11 |
| library_prepared_by | RAMACIOTTI |
| library_source | RNA |
| library_strategy | Illumina TruSeq Total RNA |
| library_type | RNA |
| location_id | Sydney |
| longitude | 151.0624105 |
| metadata_revision_date | 2024-02-06 |
| metadata_revision_filename | Australian_grasslands_metadata_combined_2024-02-01_forQCIF.xlsx |
| n_libraries_pooled | 89 |
| plant_developmental_stage | Vegetative |
| plant_growth_medium | Soil & Potting Mix |
| plant_structure | Tussock Grass |
| preservation_date_begin | 2023-04-20 |
| preservation_storage_location | Macquarie University |
| preservation_temperature | -80°C |
| project_aim | Transcriptomics-RNASeq |
| sample_id | 102.100.100/369650 |
| sample_material_associated_references | Bioline-BIO-52073 |
| sample_material_preparation_date | 2023-04-20 |
| sample_material_preparation_process | BIO-52073 RNA extraction kit |
| sample_material_preparation_type | RNA |
| sample_material_prepared_by | Jazmine Humphreys | Vinod Jacob | Alejandro Correa Lozano | Macquarie University |
| sample_replicate | 1.0 |
| scientific_name | Themeda triandra |
| scientific_name_authorship | Forssk |
| sequencing_facility | Ramaciotti |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | X Plus |
| sequencing_platform | NovaSeq |
| state_or_territory | NSW |
| taxon_id | 106636 |
| team_lead_email | brian.atwell@mq.edu.au |
| team_lead_name | Brian Atwell |
| ticket | BPAOPS-1555 |