GAP PacBio-HiFi, Reference genomes, 378164
Dataset size is: 56.41 GiB
This dataset is currently under a short embargo period until May 9, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2025-05-09 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link |
| analysis_software_version | 13.1.0.221972 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1585/20240506_GAP_BRF_m84118_240506_022436_s1/ |
| cell_postion | 1_A01 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83849 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1585 |
| date_data_published | 10/05/2024 |
| date_of_transfer | 2024-05-09 |
| date_of_transfer_to_archive | 2024-05-10 |
| description | PacBio-HiFi |
| dna_treatment | Blue pippin size selection during library prep |
| facility | BRF |
| facility_sample_id | PacBio_WGS6_650-1_lib |
| family | Myrtaceae |
| flowcell_id | m84118_240506_022436_s1 |
| flowcell_type | Revio SMRT Cells |
| folder_name | 20240506_GAP_BRF_m84118_240506_022436_s1 |
| genomic_material_associated_references | CTAB. Protocols.io High-molecular weight DNA extraction from challenging fungi using CTAB for lysis and precipitation V.3 3x sorbitol wash, CTAB lysis and precipitation - https://www.protocols.io/view/high-molecular-weight-dna-extraction-from-challeng-261ge6mkol47/v4 |
| genomic_material_preparation_date | 2023-06-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | CTAB. Protocols.io High-molecular weight DNA extraction from challenging fungi using CTAB for lysis and precipitation V.3 3x sorbitol wash, CTAB lysis and precipitation - https://www.protocols.io/view/high-molecular-weight-dna-extraction-from-challeng-261ge6mkol47/v4 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | David Cantrill |
| id_vetting_date | 2023-04-03 |
| insert_size_range | 19968.0 |
| library_comments | barcode bc2078 |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/384071 |
| library_layout | NA |
| library_location | BRF fridge 0214 |
| library_ng_ul | 30.1 |
| library_prep_date | 2024-04-16 |
| library_prepared_by | Ziyan Zhang |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | library sequenced |
| library_strategy | WGS |
| library_type | Long read HiFi library with custom steps |
| living_collections_catalog_number | RBGM 130363.2 |
| living_collections_event_date | 2023-04-03 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | DJC 2362 |
| living_collections_recorded_by | David Cantrill, Todd McLay |
| location_id | Royal Botanic Gardens Victoria, Melbourne, Australian Forest Walk |
| metadata_revision_date | 2024-10-10 |
| metadata_revision_filename | 2024-10-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 24h |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| preservation_date_begin | 2022-11-01 |
| preservation_temperature | Leaf −80°C (2022-11), DNA 4°C (2023-06) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378164 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Archirhodomyrtus beckleri |
| scientific_name_authorship | (F.Muell.) A.J.Scott |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_model | Revio |
| sequencing_platform | PACBIO |
| state_or_territory | Victoria |
| ticket | BPAOPS-1585 |
| voucher_herbarium_catalog_number | MEL 2529501A |
| voucher_herbarium_collector_id | David Cantrill |
| voucher_herbarium_event_date | 2023-04-03 |
| voucher_herbarium_record_number | DJC 2362 |
| voucher_herbarium_recorded_by | David Cantrill |