GAP PacBio-HiFi, Reference genomes, 378167
Dataset size is: 19.14 GiB
This dataset is currently under a short embargo period until May 7, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2025-05-07 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link |
| analysis_software_version | 13.1.0.221972 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1579/20240425_GAP_BRF_m84118_240425_093211_s3/ |
| cell_postion | 1_C01 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83848 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1579 |
| date_data_published | 07/05/2024 |
| date_of_transfer | 2024-05-07 |
| date_of_transfer_to_archive | 2024-05-08 |
| description | PacBio-HiFi |
| dna_treatment | Blue pippin size selection during library prep |
| facility | BRF |
| facility_sample_id | PacBio_WGS6_650-2_lib |
| family | Paracryphiaceae |
| flowcell_id | m84118_240425_093211_s3 |
| flowcell_type | Revio SMRT Cells |
| folder_name | 20240425_GAP_BRF_m84118_240425_093211_s3 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2023-06-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | Gareth Holmes |
| id_vetting_date | 2023-04-03 |
| insert_size_range | 15675.0 |
| library_comments | barcode bc2069 |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/384070 |
| library_layout | NA |
| library_location | BRF fridge 0214 |
| library_ng_ul | 26.2 |
| library_prep_date | 2024-04-25 |
| library_prepared_by | Ziyan Zhang |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | library sequenced |
| library_strategy | WGS |
| library_type | Long read HiFi library with custom steps |
| living_collections_catalog_number | RBGC 194330.1 |
| living_collections_event_date | 2023-04-03 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | GDH 155 |
| living_collections_recorded_by | Gareth Holmes |
| location_id | Royal Botanic Gardens Victoria, Cranbourne, Nursery |
| metadata_revision_date | 2024-10-10 |
| metadata_revision_filename | 2024-10-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 24h |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| preservation_date_begin | 2023-04-01 |
| preservation_temperature | Leaf −80°C (2023-04), DNA 4°C (2023-06) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378167 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Quintinia fawkneri |
| scientific_name_authorship | F.Muell. |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_model | Revio |
| sequencing_platform | PACBIO |
| state_or_territory | Victoria |
| ticket | BPAOPS-1579 |
| voucher_herbarium_catalog_number | MEL 2529504A |
| voucher_herbarium_collector_id | Gareth Holmes |
| voucher_herbarium_event_date | 2023-04-03 |
| voucher_herbarium_record_number | GDH 155 |
| voucher_herbarium_recorded_by | Gareth Holmes |