GAP PacBio-HiFi, Reference genomes, 378171
Dataset size is: 46.37 GiB
This dataset is currently under a short embargo period until February 26, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2025-02-26 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link |
| analysis_software_version | 13.0.0.207600 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1560/20240223_GAP_BRF_m84118_240223_055110_s2/ |
| cell_postion | 1_B01 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83844 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1560 |
| date_data_published | 28/2/2024 |
| date_of_transfer | 2024-02-27 |
| date_of_transfer_to_archive | 2024-02-28 |
| description | PacBio-HiFi |
| dna_treatment | Blue pippin size selection during and after library prep |
| facility | BRF |
| facility_sample_id | PacBio_WGS24_611_lib |
| family | Urticaceae |
| flowcell_id | m84118_240223_055110_s2 |
| flowcell_type | Revio SMRT Cells |
| folder_name | 20240223_GAP_BRF_m84118_240223_055110_s2 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2023-06-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | Gareth Holmes |
| id_vetting_date | 1999-07-12 |
| insert_size_range | 12000.0 |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/384066 |
| library_layout | NA |
| library_location | BRF fridge 0214 |
| library_ng_ul | 55.5 |
| library_prep_date | 2024-02-22 |
| library_prepared_by | Carolina Correa-Ospina |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | library sequenced |
| library_strategy | WGS |
| library_type | Long read Hi Fi library with custom steps |
| living_collections_catalog_number | RBGM 504051.1 |
| living_collections_event_date | 2023-03-27 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | GDH s.n. |
| living_collections_recorded_by | Gareth Holmes |
| location_id | Royal Botanic Gardens Victoria, Melbourne, Australian Forest Walk |
| metadata_revision_date | 2024-02-28 |
| metadata_revision_filename | 2024-02-28_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 24h |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| preservation_date_begin | 2023-04-01 |
| preservation_temperature | Leaf −80°C (2023-04), DNA 4°C (2023-06) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378171 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Dendrocnide excelsa |
| scientific_name_authorship | (Wedd.) Chew |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_model | Revio |
| sequencing_platform | PACBIO |
| state_or_territory | Victoria |
| ticket | BPAOPS-1560 |
| voucher_herbarium_catalog_number | MEL 2060986A |
| voucher_herbarium_collector_id | Cochrane, A.C. |
| voucher_herbarium_event_date | 1999-07-12 |
| voucher_herbarium_record_number | Cochrane, A.C. 654 |
| voucher_herbarium_recorded_by | A.C. Cochrane |