GAP PacBio-HiFi, Reference genomes, 378152
Dataset size is: 45.56 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-12-19 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link |
| analysis_software_version | 12.0.0.177059 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1543/20231128_GAP_BRF_m84118_231128_102552_s3/ |
| cell_postion | 2_C01 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83843 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1543 |
| date_data_published | 03/01/2024 |
| date_of_transfer | 2023-12-20 |
| date_of_transfer_to_archive | 2023-12-22 |
| description | PacBio-HiFi |
| dna_treatment | Blue pippin size selection during library prep |
| facility | BRF |
| facility_sample_id | PacBio_WGS13_578_lib |
| family | Doryanthaceae |
| flowcell_id | m84118_231128_102552_s3 |
| flowcell_type | Revio SMRT Cells |
| folder_name | 20231128_GAP_BRF_m84118_231128_102552_s3 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2022-02-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | Gareth Holmes |
| id_vetting_date | 2022-09-20 |
| insert_size_range | 17301.0 |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/384065 |
| library_layout | NA |
| library_location | BRF fridge 0214 |
| library_ng_ul | 108.0 |
| library_prep_date | 2023-11-28 |
| library_prepared_by | Carolina Correa-Ospina |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | library sequenced |
| library_strategy | WGS |
| library_type | HiFi |
| living_collections_catalog_number | RBGM 081009 |
| living_collections_event_date | 2022-09-20 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | GDH151 |
| living_collections_recorded_by | Gareth Holmes, Todd McLay |
| location_id | Royal Botanic Gardens Victoria, Melbourne, Australian Forest Walk |
| metadata_revision_date | 2024-10-10 |
| metadata_revision_filename | 2024-10-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 24h |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| preservation_date_begin | 2022-11-01 |
| preservation_temperature | Leaf −80°C (2022-11), DNA 4°C (2023-02) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378152 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Doryanthes excelsa |
| scientific_name_authorship | Correa |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_model | Revio |
| sequencing_platform | PACBIO |
| silica_gel | No |
| silica_gel_id | N/A |
| silica_gel_pressed_sheet | N/A |
| state_or_territory | Victoria |
| ticket | BPAOPS-1543 |
| voucher_herbarium_catalog_number | MEL 2524933A |
| voucher_herbarium_collector_id | Gareth Holmes |
| voucher_herbarium_event_date | 2022-09-20 |
| voucher_herbarium_record_number | GDH151 |
| voucher_herbarium_recorded_by | Gareth Holmes |