GAP PacBio-HiFi, Reference genomes, 378180
Dataset size is: 43.76 GiB
This dataset is currently under a short embargo period until December 19, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-12-19 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link |
| analysis_software_version | 13.0.0.208615 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1546/ |
| cell_postion | 1_B01 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83841 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1546 |
| date_data_published | 03/01/2024 |
| date_of_transfer | 2023-12-20 |
| date_of_transfer_to_archive | 2023-12-22 |
| description | PacBio-HiFi |
| dna_treatment | Blue pippin size selection during library prep |
| facility | BRF |
| facility_sample_id | PacBio_WGS10_566_lib |
| family | Geraniaceae |
| flowcell_id | m84118_231208_075745_s2 |
| flowcell_type | Revio SMRT Cells |
| folder_name | 20231208_GAP_BRF_m84118_231208_075745_s2 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2023-09-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | pending |
| id_vetting_by | Clifford Sawtell |
| id_vetting_date | 2022-11-23 |
| insert_size_range | 20094.0 |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 102.100.100/384063 |
| library_layout | NA |
| library_location | BRF fridge 0214 |
| library_ng_ul | 141.0 |
| library_prep_date | 2023-11-28 |
| library_prepared_by | Carolina Correa-Ospina |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | library sequenced |
| library_strategy | WGS |
| library_type | HiFi |
| living_collections_catalog_number | pending |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | pending |
| living_collections_recorded_by | pending |
| location_id | Adelaide Botanic Gardens |
| location_notes | Wetlands collection |
| metadata_revision_date | 2024-02-28 |
| metadata_revision_filename | 2024-02-28_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 24h |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | pending |
| preservation_date_begin | 2023-08-01 |
| preservation_temperature | Leaf −80°C (2023-08), DNA 4°C (2023-09) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378180 |
| sample_submission_date | 2023-11-01 |
| sample_submitter_email | michael.roach@adelaide.edu.au |
| sample_submitter_name | Michael Roach |
| scientific_name | Pelargonium australe |
| scientific_name_authorship | Willd. |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_model | Revio |
| sequencing_platform | PACBIO |
| state_or_territory | South Australia |
| ticket | BPAOPS-1546 |
| voucher_herbarium_catalog_number | pending |
| voucher_herbarium_collector_id | pending |
| voucher_herbarium_record_number | pending |
| voucher_herbarium_recorded_by | pending |