GAP Pacbio-HiFi, Reference genome, 378148
Dataset size is: 465.28 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-09-14 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTtools |
| analysis_software_version | 11.0.0.146107 |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1321/2022099_GAP_CAGRF220711218_DA193243/378148_GAP_AGRF_DA193243_HiFi_metadata/ |
| cell_postion | D01 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83732 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1321 |
| date_data_published | 19/9/22 |
| date_of_transfer | 2022-09-14 |
| date_of_transfer_to_archive | 2022-09-15 |
| description | Pacbio-HiFi |
| dna_extract | NA |
| dna_extract_pressed_sheet | NA |
| dna_treatment | Shearing |
| facility | AGRF |
| facility_sample_id | 378148.0 |
| family | Orchidaceae |
| flowcell_id | DA193243 |
| flowcell_type | SMRTcell 8M |
| folder_name | 2022099_GAP_CAGRF220711218_DA193243 |
| genomic_material_associated_references | n/a |
| genomic_material_preparation_date | 2022-05-23 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | CTAB extraction |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | Lalita Simpson | Australian Tropical Herbarium |
| herbarium_code | PERTH |
| id_vetting_by | Katharina Nargar |
| id_vetting_date | 2022-04-01 |
| insert_size_range | 10-20KB |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_id | 102.100.100/383106 |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 4.2 |
| library_prep_date | 2022-07-26 |
| library_prepared_by | TRENT PETERS |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | Library sequenced |
| library_strategy | Preparing HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 |
| library_type | WGS |
| living_collections_catalog_number | 988.0 |
| living_collections_event_date | 2022-03-24 |
| living_collections_record_number | KP20 988 |
| living_collections_recorded_by | Belinda Davis | Department of Biodiversity Conservation and Attractions |
| location_id | NA |
| location_notes | Due to sensitivity concerns, the coordinates of this record have been generalised: "Record is Western Australia in Sensitive. Generalised to 10km by WA DEC.". |
| metadata_revision_date | 2024-02-28 |
| metadata_revision_filename | 2024-02-28_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 30HRS |
| n_libraries_pooled | 1 |
| nagoya_protocol_compliance | Pre-Nagoya |
| nagoya_protocol_permit_number | NA |
| population_group | NA |
| preservation_date_begin | 2022-04-01 |
| preservation_temperature | −80°C |
| preservation_type | Freezing |
| project_aim | Reference genome |
| sample_id | 102.100.100/378148 |
| sample_submission_date | 2022-06-01 |
| sample_submitter_email | Katharina.Nargar@csiro.au |
| sample_submitter_name | Katharina Nargar |
| scientific_name | Thelymitra variegata |
| scientific_name_authorship | (Lindl.) F.Muell. |
| scientific_name_notes | Queen of Sheba orchid |
| sequencing_facility | AGRF |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| silica_gel | NA |
| silica_gel_id | NA |
| silica_gel_pressed_sheet | NA |
| state_or_territory | Western Australia |
| ticket | BPAOPS-1321 |
| voucher_herbarium_catalog_number | PERTH 08456771 |
| voucher_herbarium_collector_id | Belinda Newman BN002 |
| voucher_herbarium_event_date | 2010-09-01 |
| voucher_herbarium_record_number | PERTH 08456771.1 |
| voucher_herbarium_recorded_by | Belinda Newman |