GAP PacBio-HiFi, Reference genomes, 376318
Dataset size is: 318.00 GiB
Data and Resources
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376318_GAP_GWA_DA110366.subreads.bam Metadata Only BAM
Optional
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376318_GAP_GWA_DA110366.pdf Metadata Only PDF
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376318_GAP_GWA_DA110366.ccs.bam Metadata Only BAM
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376318_GAP_GWA_DA110366.xlsx Metadata Only XLSX
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376318_GAP_GWA_DA110366_ccs_stat... Metadata Only CSV
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376318_GAP_GWA_DA110366_final.co... Metadata Only XML
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376318_GAP_GWA_DA110366_v2_corre... Metadata Only PDF
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-10-01 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| Related Data | ticket:BPAOPS-1100 is related |
| analysis_software | SMRT Link |
| analysis_software_version | 10.1.0.119588 |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1143/20210909_GAP_GWA_AJ-236_DA110366/ |
| cell_postion | Cell1 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83711 |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-gap-pacbio-hifi-382896-da110366 |
| date_data_published | 11/10/2021 |
| date_of_transfer | 2021-10-01 |
| date_of_transfer_to_archive | 2021-10-04 |
| description | PacBio-HiFi |
| dna_extract | NA |
| dna_extract_pressed_sheet | NA |
| dna_treatment | Shearing on Diagenode megaruptor-3, FFPE repair with NEB kit, Blue Pippin fize selection > 15kB before library preparation |
| facility | GWA |
| facility_sample_id | iLab ID GWA-AJ-236 WC L90 PBS007 |
| family | Campanulaceae |
| flowcell_id | DA110366 |
| flowcell_type | 8M SMRT cell |
| folder_name | 20210909_GAP_GWA_GWA-AJ-236_DA110366 |
| genomic_material_associated_references | In the protocol |
| genomic_material_preparation_date | 2020-12-11 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | HMW DNA Prep https://www.protocols.io/view/scalable-high-molecular-weight-dna-extraction-for-bnjhmcj6 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | CANB |
| id_vetting_by | Adrienne Nicotra | The Australian National University |
| id_vetting_date | 2021-04-12 |
| insert_size_range | 20714 bp |
| library_construction_protocol | HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 primer V5 PN 101-853-100 Version 04 (April 2021) |
| library_id | 102.100.100/382896 |
| library_layout | NA |
| library_location | No library left |
| library_ng_ul | 48.9 |
| library_prep_date | 2021-08-13 |
| library_prepared_by | Munir |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | Library Sequenced |
| library_strategy | WGS |
| library_type | Long read Hi Fi library with custom steps |
| living_collections_catalog_number | ANJH2019 |
| living_collections_event_date | 2020-10-10 |
| living_collections_material_sample_rna | NA |
| living_collections_record_number | WC01 |
| living_collections_recorded_by | Adrienne Nicotra, Jemimah Hamilton and Kelli Gowland |
| metadata_revision_date | 2024-10-10 |
| metadata_revision_filename | 2024-10-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 30 hours |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | SL100305 |
| preservation_date_begin | 2020-10-10 |
| preservation_temperature | Leaf −80°C (2020-10-10) | DNA 4°C (2020-12-11) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/376318 |
| sample_submission_date | 2021-06-18 |
| sample_submitter_email | jemimah.hamilton@anu.edu.au | ashley.jones@anu.edu.au |
| sample_submitter_name | Jemimah Hamilton | Ash Jones |
| scientific_name | Wahlenbergia ceracea |
| scientific_name_authorship | Lothian |
| scientific_name_notes | NA |
| sequencing_facility | Genomics WA |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| silica_gel | no |
| silica_gel_id | NA |
| silica_gel_pressed_sheet | NA |
| state_or_territory | NSW |
| ticket | BPAOPS-1143 |
| voucher_herbarium_catalog_number | CANB 924602 |
| voucher_herbarium_collector_id | Adrienne Nicotra | The Australian National University |
| voucher_herbarium_event_date | 2021-04-12 |
| voucher_herbarium_record_number | CANB 924602.1 |
| voucher_herbarium_recorded_by | Adrienne Nicotra | The Australian National University |