GAP PacBio-HiFi flow cell 1, Reference genomes, 376415
Dataset size is: 864.37 GiB
Data and Resources
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376415_GAP_GWA_DA163390.pdf Metadata Only PDF
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376415_GAP_GWA_DA163390.xlsx Metadata Only XLSX
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376415_GAP_GWA_DA163390.ccs.bam Metadata Only BAM
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376415_GAP_GWA_DA163390.subreads.bam Metadata Only BAM
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376415_GAP_GWA_DA163390_ccs_stat... Metadata Only CSV
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376415_GAP_GWA_DA163390-SeqQC.pdf Metadata Only PDF
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376415_GAP_GWA_DA163390_with_5mC... Metadata Only XML
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-08-15 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link |
| analysis_software_version | 11.0.0.146107 |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1311/GWA-AS-574/20210723_GAP_GWA_GWA-AS-574_DA163390/ |
| cell_postion | D01 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83688 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1311 |
| date_data_published | 19/08/2022 |
| date_of_transfer | 2022-08-15 |
| date_of_transfer_to_archive | 2022-08-18 |
| description | PacBio-HiFi flow cell 1 |
| dna_treatment | Shearing on Diagenode megaruptor-3, FFPE repair with NEB kit, Blue Pippin fize selection > 15kB before library preparation |
| facility | GWA |
| facility_sample_id | iLab ID GWA-AS-574 L.albicans L177b PBS013 |
| family | Asteraceae |
| flowcell_id | DA163390 |
| flowcell_type | 8M SMRT cell |
| folder_name | 20210723_GAP_GWA_GWA-AS-574_DA163390 |
| genomic_material_associated_references | In the protocol |
| genomic_material_preparation_date | 2022-06-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | HMW DNA Prep https://www.protocols.io/view/scalable-high-molecular-weight-dna-extraction-for-bnjhmcj6 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | CANB |
| id_vetting_by | Schmidt-Lebuhn, Alexander |
| insert_size_range | 21051.0 |
| library_construction_protocol | HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 primer V5 PN 101-853-100 Version 04 (April 2021) |
| library_id | 102.100.100/380637 |
| library_layout | NA |
| library_location | GWA FRIDGE 7 |
| library_ng_ul | 17.52 |
| library_prep_date | 2022-07-15 |
| library_prepared_by | Hadi |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | Library Sequenced |
| library_strategy | HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 primer V5 PN 101-853-100 Version 04 (April 2021) with custom steps |
| library_type | Long read Hi Fi library with custom steps |
| location_notes | Edge of Mt Majura Nature Reserve towards Federal Hwy |
| metadata_revision_date | 2024-02-28 |
| metadata_revision_filename | 2024-02-28_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 30 hours |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | ACT PERMIT PL2018160 |
| preservation_temperature | −80°C |
| preservation_type | Tissue - freezing |
| project_aim | Reference genomes |
| sample_id | 102.100.100/376415 |
| sample_submission_date | 2022-06-01 |
| sample_submitter_email | alexander.schmidt-lebuhn@csiro.au |
| sample_submitter_name | Schmidt-Lebuhn, Alexander |
| scientific_name | Leucochrysum albicans |
| scientific_name_authorship | (A.Cunn.) Paul G.Wilson |
| scientific_name_notes | subsp. tricolor (DC.) N.G.Walsh |
| sequencing_facility | Genomics WA |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| state_or_territory | ACT |
| ticket | BPAOPS-1311 |
| voucher_herbarium_catalog_number | CANB 920543.1 |
| voucher_herbarium_collector_id | Schmidt-Lebuhn, Alexander |
| voucher_herbarium_event_date | 2021-01-12 |
| voucher_herbarium_record_number | 1997 |
| voucher_herbarium_recorded_by | Schmidt-Lebuhn, Alexander |