GAP PacBio-HiFi, Reference genomes, 376317
Dataset size is: 621.18 GiB
Data and Resources
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376317_GAP_GWA_DA110333_ccs_stat... Metadata Only CSV
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376317_GAP_GWA_DA110333_with_5mC... Metadata Only XML
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376317_GAP_GWA_DA110333.xlsx Metadata Only XLSX
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376317_GAP_GWA_DA110333.pdf Metadata Only PDF
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376317_GAP_GWA_DA110333.ccs.bam Metadata Only BAM
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376317_GAP_GWA_DA110333.subreads.bam Metadata Only BAM
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-06-27 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRT Link |
| analysis_software_version | 11.0.0.144466 |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/pacbio-hifi/BPAOPS-1292/20220623_GAP_GWA_GWA-RF-517_DA110333/ |
| cell_postion | A01 |
| country | NA |
| data_type | Main dataset |
| dataset_id | 102.100.100/83680 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1292 |
| date_data_published | 30/6/2022 |
| date_of_transfer | 2022-06-27 |
| date_of_transfer_to_archive | 2022-06-29 |
| description | PacBio-HiFi |
| dna_extract | NA |
| dna_extract_pressed_sheet | NA |
| dna_treatment | Shearing on Diagenode megaruptor-3, FFPE repair with NEB kit, Blue Pippin fize selection > 15kB before library preparation |
| facility | GWA |
| facility_sample_id | iLab ID GWA-RF-517 E. drum L162 PBS012 |
| family | Scrophulariaceae |
| flowcell_id | DA110333 |
| flowcell_type | 8M SMRT cell |
| folder_name | 20220623_GAP_GWA_GWA-RF-517_DA110333 |
| genomic_material_associated_references | GAP Acacia pycnantha protocol for extraction of high yield high quality DNA |
| genomic_material_preparation_date | 2022-03-18 |
| genomic_material_preparation_materials | Sorbitol buffer, SDS, sodium acetate/isopropanol precipitation |
| genomic_material_preparation_process | SDS extraction |
| genomic_material_preparation_type | Total genomic DNA |
| genomic_material_prepared_by | Rachael Fowler | The University of Melbourne |
| herbarium_code | MELU |
| id_vetting_by | Russell Waite |
| id_vetting_date | 2019-09-23 |
| insert_size_range | 18000 bp |
| library_construction_protocol | HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 primer V5 PN 101-853-100 Version 04 (April 2021) |
| library_id | 102.100.100/380525 |
| library_layout | NA |
| library_location | GWA FRIDGE 7 |
| library_ng_ul | 162.0 |
| library_prep_date | 2022-06-20 |
| library_prepared_by | Munir |
| library_selection | RANDOM |
| library_source | GENOMIC |
| library_status | Library Sequenced |
| library_strategy | HiFi SMRTbell® Libraries using the SMRTbell Express Template Prep Kit 2.0 primer V5 PN 101-853-100 Version 04 (April 2021) with custom steps |
| library_type | Long read Hi Fi library with custom steps |
| living_collections_material_sample_rna | NA |
| location_id | NA |
| location_notes | NA |
| metadata_revision_date | 2024-02-28 |
| metadata_revision_filename | 2024-02-28_Combined_plant_sample_metadata_forQCIF.xlsx |
| movie_length | 30 hours |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | FT61000263 |
| population_group | NA |
| preservation_date_begin | 2021-03-22 |
| preservation_temperature | −80°C |
| preservation_type | Tissue - freezing |
| project_aim | Reference genomes |
| sample_id | 102.100.100/376317 |
| sample_submission_date | 2022-04-08 |
| sample_submitter_email | rachael.fowler@unimelb.edu.au |
| sample_submitter_name | Rachael Fowler| The University of Melbourne |
| scientific_name | Eremophila drummondii |
| scientific_name_authorship | F. Muell. |
| scientific_name_notes | NA |
| sequencing_facility | Genomics WA |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| silica_gel | NA |
| silica_gel_id | NA |
| silica_gel_pressed_sheet | NA |
| state_or_territory | NA |
| ticket | BPAOPS-1292 |
| voucher_herbarium_catalog_number | MELUD155122a |
| voucher_herbarium_collector_id | Russell Waite |
| voucher_herbarium_event_date | 2019-09-23 |
| voucher_herbarium_record_number | RW8935_19 |
| voucher_herbarium_recorded_by | Russell Waite |