GAP PromethION, Reference genomes, 378163
Dataset size is: 594.55 GiB
This dataset is currently under a short embargo period until July 15, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2025-07-15 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1617/20240702_GAP_BRF_PAW59763/ |
| ccg_jira_ticket | BPAOPS-1617 |
| cell_postion | 2C |
| country | Australia |
| data_type | Main dataset (Phase 4 ref genomes) |
| dataset_id | 83850 |
| date_data_published | 30/7/24 |
| date_of_transfer | 2024-07-15 |
| date_of_transfer_to_archive | 2024-07-17 |
| description | PromethION |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1617 |
| facility | BRF |
| family | Proteaceae |
| flow_cell_id | PAW59763 |
| flow_cell_type | FLO-PRO114M |
| folder_name | 20240702_GAP_BRF_PAW59763 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2023-09-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | HO |
| id_vetting_by | Gintaras Kantivilas |
| id_vetting_date | 2023-05-06 |
| insert_size_range | 40000.0 |
| library_construction_protocol | SQK-LSK114 |
| library_id | 102.100.100/384072 |
| living_collections_catalog_number | N/A |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | N/A |
| living_collections_recorded_by | N/A |
| location_id | Wellington Park, Hobart, Tasmania |
| location_notes | On Ice House Track |
| metadata_revision_date | 2024-10-10 |
| metadata_revision_filename | 2024-10-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | Letter of permission from Wellington Park Management Trust held at RBGV |
| nanopore_software_version | 24.02.19 |
| preservation_date_begin | 2023-08-01 |
| preservation_temperature | Leaf −80°C (2023-08), DNA 4°C (2023-09) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378163 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Bellendena montana |
| scientific_name_authorship | R.Br. |
| sequencer | PromethION24 |
| state_or_territory | Tasmania |
| ticket | BPAOPS-1617 |
| voucher_herbarium_catalog_number | HO 613866 |
| voucher_herbarium_collector_id | Gintaras Kantivilas |
| voucher_herbarium_event_date | 2023-05-06 |
| voucher_herbarium_record_number | Kantvilas G. s.n. |
| voucher_herbarium_recorded_by | Gintaras Kantivilas |