GAP PromethION, Reference genomes, 378167
Dataset size is: 879.67 GiB
Data and Resources
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378167_GAP_BRF_PAQ20949_ONTProme... Metadata Only TAR
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378167_GAP_BRF_PAQ20949_ONTProme... Metadata Only TAR
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378167_GAP_BRF_PAQ20949_ONTProme... Metadata Only TAR
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378167_GAP_BRF_PAQ20949_ONTProme... Metadata Only HTML
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378167_GAP_BRF_PAQ20949_ONTProme... Metadata Only TAR
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378167_GAP_BRF_PAQ20949_ONTProme... Metadata Only
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-09-19 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1481/20230912_GAP_BRF_PAQ20949/ |
| ccg_jira_ticket | BPAOPS-1481 |
| cell_postion | 2D |
| country | Australia |
| data_type | Main dataset (Phase 4 ref genomes) |
| dataset_id | 83838 |
| date_data_published | 2/10/23 |
| date_of_transfer | 2023-09-20 |
| date_of_transfer_to_archive | 2023-09-25 |
| description | PromethION |
| download | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket:BPAOPS-1481 |
| facility | BRF |
| family | Paracryphiaceae |
| flow_cell_id | PAQ20949 |
| flow_cell_type | FLO-PRO114M |
| folder_name | 20230912_GAP_BRF_PAQ20949 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2023-06-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | Gareth Holmes |
| id_vetting_date | 2023-04-03 |
| insert_size_range | 22Kb |
| library_construction_protocol | SQK-LSK114 |
| library_id | 102.100.100/384060 |
| living_collections_catalog_number | RBGC 194330.1 |
| living_collections_event_date | 2023-04-03 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | GDH 155 |
| living_collections_recorded_by | Gareth Holmes |
| location_id | Royal Botanic Gardens Victoria, Cranbourne, Nursery |
| metadata_revision_date | 2024-10-10 |
| metadata_revision_filename | 2024-10-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| nanopore_software_version | 23.04.6 |
| preservation_date_begin | 2023-04-01 |
| preservation_temperature | Leaf −80°C (2023-04), DNA 4°C (2023-06) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378167 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Quintinia fawkneri |
| scientific_name_authorship | F.Muell. |
| sequencer | Promethion |
| state_or_territory | Victoria |
| ticket | BPAOPS-1481 |
| voucher_herbarium_catalog_number | MEL 2529504A |
| voucher_herbarium_collector_id | Gareth Holmes |
| voucher_herbarium_event_date | 2023-04-03 |
| voucher_herbarium_record_number | GDH 155 |
| voucher_herbarium_recorded_by | Gareth Holmes |