GAP PromethION, Reference genomes, 378167
Dataset size is: 776.06 GiB
This dataset is currently under a short embargo period until September 19, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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378167_GAP_BRF_PAQ20169_ONTProme... Metadata Only TAR
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378167_GAP_BRF_PAQ20169_ONTProme... Metadata Only HTML
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378167_GAP_BRF_PAQ20169_ONTProme... Metadata Only TAR
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378167_GAP_BRF_PAQ20169_ONTProme... Metadata Only TAR
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378167_GAP_BRF_PAQ20169_ONTProme... Metadata Only TAR
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378167_GAP_BRF_PAQ20169_ONTProme... Metadata Only
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-09-19 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1480/20230911_GAP_BRF_PAQ20169/ |
| ccg_jira_ticket | BPAOPS-1480 |
| cell_postion | 1B |
| country | Australia |
| data_type | Main dataset (Phase 4 ref genomes) |
| dataset_id | 83835 |
| date_data_published | 2/10/23 |
| date_of_transfer | 2023-09-20 |
| date_of_transfer_to_archive | 2023-09-22 |
| description | PromethION |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1480 |
| facility | BRF |
| family | Paracryphiaceae |
| flow_cell_id | PAQ20169 |
| flow_cell_type | FLO-PRO114M |
| folder_name | 20230911_GAP_BRF_PAQ20169 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2023-06-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | Gareth Holmes |
| id_vetting_date | 2023-04-03 |
| insert_size_range | 22Kb |
| library_construction_protocol | SQK-LSK114 |
| library_id | 102.100.100/384057 |
| living_collections_catalog_number | RBGC 194330.1 |
| living_collections_event_date | 2023-04-03 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | GDH 155 |
| living_collections_recorded_by | Gareth Holmes |
| location_id | Royal Botanic Gardens Victoria, Cranbourne, Nursery |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| nanopore_software_version | 23.04.6 |
| preservation_date_begin | 2023-04-01 |
| preservation_temperature | Leaf −80°C (2023-04), DNA 4°C (2023-06) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378167 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Quintinia fawkneri |
| scientific_name_authorship | F.Muell. |
| sequencer | Promethion |
| state_or_territory | Victoria |
| ticket | BPAOPS-1480 |
| voucher_herbarium_catalog_number | MEL 2529504A |
| voucher_herbarium_collector_id | Gareth Holmes |
| voucher_herbarium_event_date | 2023-04-03 |
| voucher_herbarium_record_number | GDH 155 |
| voucher_herbarium_recorded_by | Gareth Holmes |