GAP PromethION, Reference genomes, 378164
Dataset size is: 1.02 TiB
This dataset is currently under a short embargo period until September 12, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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378164_GAP_BRF_PAQ09226_ONTProme... Metadata Only
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378164_GAP_BRF_PAQ09226_ONTProme... Metadata Only TAR
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378164_GAP_BRF_PAQ09226_ONTProme... Metadata Only TAR
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378164_GAP_BRF_PAQ09226_ONTProme... Metadata Only TAR
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378164_GAP_BRF_PAQ09226_ONTProme... Metadata Only HTML
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378164_GAP_BRF_PAQ09226_ONTProme... Metadata Only TAR
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-09-12 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1473/20230904_GAP_BRF_PAQ09226/ |
| ccg_jira_ticket | BPAOPS-1473 |
| cell_postion | 2A |
| country | Australia |
| data_type | Main dataset (Phase 4 ref genomes) |
| dataset_id | 83834 |
| date_data_published | 20/09/2023 |
| date_of_transfer | 2023-09-13 |
| date_of_transfer_to_archive | 2023-09-18 |
| description | PromethION |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1473 |
| facility | BRF |
| family | Myrtaceae |
| flow_cell_id | PAQ09226 |
| flow_cell_type | FLO-PRO114M |
| folder_name | 20230904_GAP_BRF_PAQ09226 |
| genomic_material_associated_references | CTAB. Protocols.io High-molecular weight DNA extraction from challenging fungi using CTAB for lysis and precipitation V.3 3x sorbitol wash, CTAB lysis and precipitation - https://www.protocols.io/view/high-molecular-weight-dna-extraction-from-challeng-261ge6mkol47/v3 |
| genomic_material_preparation_date | 2023-06-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | CTAB. Protocols.io High-molecular weight DNA extraction from challenging fungi using CTAB for lysis and precipitation V.3 3x sorbitol wash, CTAB lysis and precipitation - https://www.protocols.io/view/high-molecular-weight-dna-extraction-from-challeng-261ge6mkol47/v3 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | David Cantrill |
| id_vetting_date | 2023-04-03 |
| insert_size_range | 33Kb |
| library_construction_protocol | SQK-LSK114 |
| library_id | 102.100.100/384056 |
| living_collections_catalog_number | RBGM 130363.2 |
| living_collections_event_date | 2023-04-03 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | DJC 2362 |
| living_collections_recorded_by | David Cantrill, Todd McLay |
| location_id | Royal Botanic Gardens Victoria, Melbourne, Australian Forest Walk |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| nanopore_software_version | 26.04.6 |
| preservation_date_begin | 2022-11-01 |
| preservation_temperature | Leaf −80°C (2022-11), DNA 4°C (2023-06) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378164 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Archirhodomyrtus beckleri |
| scientific_name_authorship | (F.Muell.) A.J.Scott |
| sequencer | Promethion |
| state_or_territory | Victoria |
| ticket | BPAOPS-1473 |
| voucher_herbarium_catalog_number | MEL 2529501A |
| voucher_herbarium_collector_id | David Cantrill |
| voucher_herbarium_event_date | 2023-04-03 |
| voucher_herbarium_record_number | DJC 2362 |
| voucher_herbarium_recorded_by | David Cantrill |