GAP PromethION, Reference genomes, 378154
Dataset size is: 396.19 GiB
This dataset is currently under a short embargo period until August 16, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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378154_GAP_BRF_PAQ20854_ONTProme... Metadata Only TAR
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378154_GAP_BRF_PAQ20854_ONTProme... Metadata Only HTML
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378154_GAP_BRF_PAQ20854_ONTProme... Metadata Only TAR
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378154_GAP_BRF_PAQ20854_ONTProme... Metadata Only
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378154_GAP_BRF_PAQ20854_ONTProme... Metadata Only TAR
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378154_GAP_BRF_PAQ20854_ONTProme... Metadata Only TAR
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-08-16 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1461/20230727_GAP_BRF_PAQ20854/ |
| ccg_jira_ticket | BPAOPS-1461 |
| cell_postion | 1F |
| country | Australia |
| data_type | Main dataset (Phase 4 ref genomes) |
| dataset_id | 83829 |
| date_data_published | 21/06/2023 |
| date_of_transfer | 2023-08-17 |
| date_of_transfer_to_archive | 2023-08-18 |
| description | PromethION |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1461 |
| facility | BRF |
| family | Proteaceae |
| flow_cell_id | PAQ20854 |
| flow_cell_type | FLO-PRO114M |
| folder_name | 20230727_GAP_BRF_PAQ20854 |
| genomic_material_associated_references | CTAB. Protocols.io High-molecular weight DNA extraction from challenging fungi using CTAB for lysis and precipitation V.3 3x sorbitol wash, CTAB lysis and precipitation - https://www.protocols.io/view/high-molecular-weight-dna-extraction-from-challeng-261ge6mkol47/v5 |
| genomic_material_preparation_date | 2022-02-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | CTAB. Protocols.io High-molecular weight DNA extraction from challenging fungi using CTAB for lysis and precipitation V.3 3x sorbitol wash, CTAB lysis and precipitation - https://www.protocols.io/view/high-molecular-weight-dna-extraction-from-challeng-261ge6mkol47/v5 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | Gareth Holmes |
| id_vetting_date | 2022-09-20 |
| insert_size_range | 30Kb |
| library_construction_protocol | SQK-LSK114 |
| library_id | 102.100.100/384051 |
| living_collections_catalog_number | RBGM 110813 |
| living_collections_event_date | 2022-09-20 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | GDH153 |
| living_collections_recorded_by | Gareth Holmes, Todd McLay |
| location_id | Royal Botanic Gardens Victoria, Melbourne, Proteaceae Bed |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| nanopore_software_version | 23.04.6 |
| preservation_date_begin | 2022-11-01 |
| preservation_temperature | Leaf −80°C (2022-11), DNA 4°C (2023-02) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378154 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Isopogon anethifolius |
| scientific_name_authorship | (Salisb.) Knight |
| sequencer | Promethion |
| silica_gel | No |
| silica_gel_id | N/A |
| silica_gel_pressed_sheet | N/A |
| state_or_territory | Victoria |
| ticket | BPAOPS-1461 |
| voucher_herbarium_catalog_number | MEL 2524935A |
| voucher_herbarium_collector_id | Gareth Holmes |
| voucher_herbarium_event_date | 2022-09-20 |
| voucher_herbarium_record_number | GDH153 |
| voucher_herbarium_recorded_by | Gareth Holmes |