GAP PromethION, Reference genomes, 378178
Dataset size is: 457.92 GiB
This dataset is currently under a short embargo period until November 30, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
-
378178_GAP_BRF_PAQ21073_ONTProme... Metadata Only TAR
-
378178_GAP_BRF_PAQ21073_ONTProme... Metadata Only TAR
-
378178_GAP_BRF_PAQ21073_ONTProme... Metadata Only TAR
-
378178_GAP_BRF_PAQ21073_ONTProme... Metadata Only
-
378178_GAP_BRF_PAQ21073_ONTProme... Metadata Only TAR
-
378178_GAP_BRF_PAQ21073_ONTProme... Metadata Only HTML
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member |
Access Control Date | 2024-11-30 |
Access Control Mode | date |
Sequence Data Type | ont-promethion |
base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1532/20231106_GAP_BRF_PAQ21073/ |
ccg_jira_ticket | BPAOPS-1532 |
cell_postion | 2B |
country | Australia |
data_type | Main dataset (Phase 4 ref genomes) |
dataset_id | 83817 |
date_of_transfer | 2023-12-01 |
date_of_transfer_to_archive | 2023-12-04 |
description | PromethION |
facility | BRF |
family | Cunoniaceae |
flow_cell_id | PAQ21073 |
flow_cell_type | FLO-PRO114M |
folder_name | 20231106_GAP_BRF_PAQ21073 |
genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
genomic_material_preparation_date | 2023-09-01 |
genomic_material_preparation_materials | In the protocol |
genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
genomic_material_preparation_type | Leaf gDNA |
genomic_material_prepared_by | Ashley Jones |
herbarium_code | MEL |
id_vetting_by | Gareth Holmes |
id_vetting_date | 2023-05-15 |
insert_size_range | 26Kb |
library_construction_protocol | SQK-LSK114 |
library_id | 102.100.100/384039 |
living_collections_catalog_number | RBGC 194355 |
living_collections_event_date | 2023-05-15 |
living_collections_material_sample_rna | N/A |
living_collections_record_number | GDH 174 |
living_collections_recorded_by | Gareth Holmes |
location_id | Royal Botanic Gardens Victoria, Cranbourne. Gondwanan Garden |
metadata_revision_date | 2023-12-08 |
metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
nagoya_protocol_compliance | Yes |
nagoya_protocol_permit_number | 10008918.0 |
nanopore_software_version | 23.07.12 |
preservation_date_begin | 2023-08-01 |
preservation_temperature | Leaf −80°C (2023-08), DNA 4°C (2023-09) |
preservation_type | Freezing, fridge |
project_aim | Reference genomes |
sample_id | 102.100.100/378178 |
sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
sample_submitter_name | David Cantrill |
scientific_name | Eucryphia lucida |
scientific_name_authorship | (Labill.) Baill. |
sequencer | PromethION |
silica_gel | No |
silica_gel_id | N/A |
silica_gel_pressed_sheet | N/A |
state_or_territory | Victoria |
ticket | BPAOPS-1532 |
voucher_herbarium_catalog_number | MEL 2529901A |
voucher_herbarium_collector_id | Gareth Holmes |
voucher_herbarium_event_date | 2023-05-15 |
voucher_herbarium_record_number | GDH174 |
voucher_herbarium_recorded_by | G.D. Holmes |