GAP PromethION, Reference genomes, 378159
Dataset size is: 1.08 TiB
This dataset is currently under a short embargo period until May 23, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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378159_GAP_BRF_PAO34975_ONTProme... Metadata Only HTML
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378159_GAP_BRF_PAO34975_ONTProme... Metadata Only TAR
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378159_GAP_BRF_PAO34975_ONTProme... Metadata Only
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378159_GAP_BRF_PAO34975_ONTProme... Metadata Only TAR
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378159_GAP_BRF_PAO34975_ONTProme... Metadata Only TAR
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378159_GAP_BRF_PAO34975_ONTProme... Metadata Only TAR
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-05-23 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1399/20230424_GAP_BRF_PAO34975/ |
| ccg_jira_ticket | BPAOPS-1399 |
| cell_postion | 2B |
| country | Australia |
| data_type | Main dataset (Phase 4 ref genomes) |
| dataset_id | 83770 |
| date_data_published | 02/06/2023 |
| date_of_transfer | 2023-05-24 |
| date_of_transfer_to_archive | 2023-05-29 |
| description | PromethION |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1399 |
| facility | BRF |
| family | Austrobaileyaceae |
| flow_cell_id | PAO34975 |
| flow_cell_type | FLO-PRO114M |
| folder_name | 20230424_GAP_BRF_PAO34975 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2023-02-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | CNS |
| insert_size_range | 40Kb |
| library_construction_protocol | SQK-LSK114 |
| library_id | 102.100.100/383146 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | 20100039.0 |
| location_notes | Cultivated Cairns Botanic Gardens. Wild sourced from the vicinity of Ravenshoe, Qld. |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| nanopore_software_version | 22.12.5 |
| preservation_date_begin | 2022-11-01 |
| preservation_temperature | Leaf −80°C (2022-11), DNA 4°C (2023-02) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378159 |
| sample_submission_date | 2022-09-19 |
| sample_submitter_email | darren.crayn@jcu.edu.au |
| sample_submitter_name | Darren Crayn |
| scientific_name | Austrobaileya scandens |
| scientific_name_authorship | C.T.White |
| sequencer | Promethion |
| state_or_territory | Queensland |
| ticket | BPAOPS-1399 |
| voucher_herbarium_catalog_number | 1654 |
| voucher_herbarium_collector_id | D.M. Crayn |
| voucher_herbarium_record_number | 153187 |