GAP PromethION, Reference genomes, 378152

Doryanthes excelsa Correa, Doryanthaceae, David Cantrill

Dataset size is: 1008.54 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
Access Control Date 2024-05-14
Access Control Mode date
Sequence Data Type ont-promethion
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1390/20230411_GAP_BRF_PAO35672/
ccg_jira_ticket BPAOPS-1390
cell_postion 3F
country Australia
data_type Main dataset (Phase 4 ref genomes)
dataset_id 83761
date_data_published 22/5/23
date_of_transfer 2023-05-15
date_of_transfer_to_archive 2023-05-18
description PromethION
download https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1390
facility BRF
family Doryanthaceae
flow_cell_id PAO35672
flow_cell_type FLO-PRO114M
folder_name 20230417_GAP_BRF_PAO35672
genomic_material_associated_references Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830
genomic_material_preparation_date 2022-02-01
genomic_material_preparation_materials In the protocol
genomic_material_preparation_process Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830
genomic_material_preparation_type Leaf gDNA
genomic_material_prepared_by Ashley Jones
herbarium_code MEL
id_vetting_by Gareth Holmes
id_vetting_date 2022-09-20
insert_size_range 40Kb
library_construction_protocol SQK-LSK114
library_id 102.100.100/383137
living_collections_catalog_number RBGM 081009
living_collections_event_date 2022-09-20
living_collections_material_sample_rna N/A
living_collections_record_number GDH151
living_collections_recorded_by Gareth Holmes, Todd McLay
location_id Royal Botanic Gardens Victoria, Melbourne, Australian Forest Walk
metadata_revision_date 2024-10-10
metadata_revision_filename 2024-10-08_Combined_plant_sample_metadata_forQCIF.xlsx
nagoya_protocol_compliance Yes
nagoya_protocol_permit_number 10008918.0
nanopore_software_version 22.12.5
preservation_date_begin 2022-11-01
preservation_temperature Leaf −80°C (2022-11), DNA 4°C (2023-02)
preservation_type Freezing, fridge
project_aim Reference genomes
sample_id 102.100.100/378152
sample_submitter_email David.Cantrill@rbg.vic.gov.au
sample_submitter_name David Cantrill
scientific_name Doryanthes excelsa
scientific_name_authorship Correa
sequencer Promethion
silica_gel No
silica_gel_id N/A
silica_gel_pressed_sheet N/A
state_or_territory Victoria
ticket BPAOPS-1390
voucher_herbarium_catalog_number MEL 2524933A
voucher_herbarium_collector_id Gareth Holmes
voucher_herbarium_event_date 2022-09-20
voucher_herbarium_record_number GDH151
voucher_herbarium_recorded_by Gareth Holmes