GAP PromethION, Reference genomes, 376316
Dataset size is: 115.58 GiB
Data and Resources
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376316_LibID383122_GAP_BRF_PAM80... Metadata Only TAR
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376316_LibID383122_GAP_BRF_PAM80... Metadata Only TAR
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376316_LibID383122_GAP_BRF_PAM80... Metadata Only TAR
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376316_LibID383122_GAP_BRF_PAM80... Metadata Only TAR
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376316_GAP_BRF_PAM80422_sequenci... Metadata Only
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376316_GAP_BRF_PAM80422_barcode_... Metadata Only
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376316_GAP_BRF_PAM80422_report.html Metadata Only HTML
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-12-07 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| bait_set_reference | not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1349/20221116_GAP_BRF_PAM80422/ |
| ccg_jira_ticket | BPAOPS-1349 |
| cell_postion | 2D |
| country | Australia |
| data_type | Main dataset (Phase 2 ref genomes) |
| dataset_id | 83749 |
| date_of_transfer | 2022-12-07 |
| date_of_transfer_to_archive | 2022-12-08 |
| description | PromethION - RNA - multiple samples |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1349 |
| facility | BRF |
| family | Rutaceae |
| flow_cell_id | PAM80422 |
| flow_cell_type | FLO-PRO002 |
| folder_name | 20221116_GAP_BRF_PAM80422 |
| genomic_material_associated_references | In the protocol |
| genomic_material_preparation_date | 2022-06-27 |
| genomic_material_preparation_materials | in protocol |
| genomic_material_preparation_process | Isolation of total RNA from plant tissues using the RNeasy® Plant Mini Kit; alternative procedure https://www.qiagen.com/us/resources/download.aspx?id=3eac15e4-db02-4bba-a655-9b17ff44c7be&lang=en |
| genomic_material_preparation_type | Leaf RNA |
| genomic_material_prepared_by | Tareg Shaldoom |
| herbarium_code | NE |
| id_vetting_by | Jeremy Bruhl |
| id_vetting_date | 2019-03-09 |
| insert_size_range | 1714.0 |
| library_construction_protocol | SQK-PCB111-24 |
| library_id | 102.100.100/383122 |
| living_collections_catalog_number | UNE20201105 |
| living_collections_event_date | 2020-11-05 |
| living_collections_material_sample_rna | Leaf |
| living_collections_record_number | SD354 |
| living_collections_recorded_by | S. Dema, J.J.Bruhl & I.Telford |
| location_notes | Wild Cattle Creek State Forest, N of Cascade, 2.3 km along Measuring Hut Road from junction with Moses Rock Road |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | SL100305 |
| nanopore_software_version | 22.08.9 |
| preservation_temperature | Tissue and RNA −80°C |
| preservation_type | Freezing |
| project_aim | Reference genomes |
| sample_id | 102.100.100/376316 |
| sample_submission_date | 2022-11-01 |
| sample_submitter_email | randre20@une.edu.au | ashley.jones@anu.edu.au |
| sample_submitter_name | Rose Andrew | Ash Jones |
| scientific_name | Phebalium stellatum |
| scientific_name_authorship | I.Telford & J.J.Bruhl |
| scientific_name_notes | NA |
| sequencer | PromethION |
| silica_gel | no |
| state_or_territory | NSW |
| ticket | BPAOPS-1349 |
| voucher_herbarium_catalog_number | 109286 |
| voucher_herbarium_collector_id | S.Dema |
| voucher_herbarium_event_date | 2019-09-03 |
| voucher_herbarium_record_number | S.Dema 354 |
| voucher_herbarium_recorded_by | Sangay Dema | Jeremy Bruhl | Ian Telford | University of New England |