GAP PromethION, Reference genomes, 378152
Dataset size is: 1.15 TiB
This dataset is currently under a short embargo period until May 9, 2024 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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378152_GAP_BRF_PAO30530_ONTProme... Metadata Only HTML
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378152_GAP_BRF_PAO30530_ONTProme... Metadata Only TAR
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378152_GAP_BRF_PAO30530_ONTProme... Metadata Only TAR
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378152_GAP_BRF_PAO30530_ONTProme... Metadata Only
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378152_GAP_BRF_PAO30530_ONTProme... Metadata Only TAR
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378152_GAP_BRF_PAO30530_ONTProme... Metadata Only TAR
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-05-09 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1389/20230411_GAP_BRF_PAO30530/ |
| ccg_jira_ticket | BPAOPS-1389 |
| cell_postion | 1G |
| country | Australia |
| data_type | Main dataset (Phase 4 ref genomes) |
| dataset_id | 83738 |
| date_data_published | 22/5/23 |
| date_of_transfer | 2023-05-10 |
| date_of_transfer_to_archive | 2023-05-15 |
| description | PromethION |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1389 |
| facility | BRF |
| family | Doryanthaceae |
| flow_cell_id | PAO30530 |
| flow_cell_type | FLO-PRO114M |
| folder_name | 20230411_GAP_BRF_PAO30530 |
| genomic_material_associated_references | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_date | 2022-02-01 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Jones et al (2021) PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253830 |
| genomic_material_preparation_type | Leaf gDNA |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | MEL |
| id_vetting_by | Gareth Holmes |
| id_vetting_date | 2022-09-20 |
| insert_size_range | 40Kb |
| library_construction_protocol | SQK-LSK114 |
| library_id | 102.100.100/383112 |
| living_collections_catalog_number | RBGM 081009 |
| living_collections_event_date | 2022-09-20 |
| living_collections_material_sample_rna | N/A |
| living_collections_record_number | GDH151 |
| living_collections_recorded_by | Gareth Holmes, Todd McLay |
| location_id | Royal Botanic Gardens Victoria, Melbourne, Australian Forest Walk |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | 10008918.0 |
| nanopore_software_version | 22.12.5 |
| preservation_date_begin | 2022-11-01 |
| preservation_temperature | Leaf −80°C (2022-11), DNA 4°C (2023-02) |
| preservation_type | Freezing, fridge |
| project_aim | Reference genomes |
| sample_id | 102.100.100/378152 |
| sample_submitter_email | David.Cantrill@rbg.vic.gov.au |
| sample_submitter_name | David Cantrill |
| scientific_name | Doryanthes excelsa |
| scientific_name_authorship | Correa |
| sequencer | Promethion |
| silica_gel | No |
| silica_gel_id | N/A |
| silica_gel_pressed_sheet | N/A |
| state_or_territory | Victoria |
| ticket | BPAOPS-1389 |
| voucher_herbarium_catalog_number | MEL 2524933A |
| voucher_herbarium_collector_id | Gareth Holmes |
| voucher_herbarium_event_date | 2022-09-20 |
| voucher_herbarium_record_number | GDH151 |
| voucher_herbarium_recorded_by | Gareth Holmes |