GAP PromethION, Reference genomes, 376315
Dataset size is: 361.08 GiB
Data and Resources
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376315_PAH92172_GAP_BRF_ONTProme... Metadata Only HTML
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376315_PAH92172_GAP_BRF_ONTProme... Metadata Only
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376315_PAH92172_GAP_BRF_ONTProme... Metadata Only TAR
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376315_PAH92172_GAP_BRF_ONTProme... Metadata Only TAR
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376315_PAH92172_GAP_BRF_ONTProme... Metadata Only TAR
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376315_PAH92172_GAP_BRF_ONTProme... Metadata Only TAR
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-05-24 |
| Access Control Mode | date |
| Sequence Data Type | ont-promethion |
| bait_set_reference | not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ont-promethion/BPAOPS-1264/20220519_GAP_BRF_PAH92172/ |
| ccg_jira_ticket | BPAOPS-1264 |
| cell_postion | 2A |
| country | Australia |
| data_type | Main dataset (Phase 2 ref genomes) |
| dataset_id | 83726 |
| date_data_published | 1/6/22 |
| date_of_transfer | 2022-05-24 |
| date_of_transfer_to_archive | 2022-06-01 |
| description | PromethION |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1264 |
| facility | BRF |
| family | Asphodelacaeceae |
| flow_cell_id | PAH92172 |
| flow_cell_type | FLO-PRO002 |
| folder_name | 20220519_GAP_BRF_PAH92172 |
| genomic_material_associated_references | Chang et al (1993) https://doi.org/10.1007/BF02670468 |
| genomic_material_preparation_date | 2022-02-10 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Protocol io version: https://www.protocols.io/view/rna-extractions-from-de-etiolated-arabidopsis-seed-rm7vznex2vx1/v1 |
| genomic_material_preparation_type | Bract total RNA |
| genomic_material_prepared_by | Andy Bachler | Ashley Jones | Todd McLay |
| herbarium_code | CBG |
| id_vetting_by | Todd McLay |
| id_vetting_date | 2020-12-01 |
| insert_size_range | 1.4Kb |
| library_construction_protocol | SQK-PCS111 |
| library_id | 102.100.100/383007 |
| living_collections_catalog_number | CBG 8311086.1 |
| living_collections_event_date | 2020-12-01 |
| living_collections_material_sample_rna | bract |
| living_collections_record_number | TM350 |
| living_collections_recorded_by | R. Hallett |
| location_id | Australian National Botanic Gardens, Canberra, ACT, Section 15f |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | DNP Reference: 2020/21-1 |
| nanopore_software_version | 22.03.4 |
| preservation_date_begin | 2020-12-01 |
| preservation_temperature | Bract−80°C (2020-12-01) | RNA −80°C (2022-02-10) |
| preservation_type | Freezing |
| project_aim | Reference genomes |
| sample_id | 102.100.100/376315 |
| sample_submission_date | 2022-04-28 |
| sample_submitter_email | todd.McLay@rbg.vic.gov.au | ashley.jones@anu.edu.au |
| sample_submitter_name | Todd McLay | Ash Jones |
| scientific_name | Xanthorrhoea johnsonii |
| scientific_name_authorship | A.T.Lee |
| scientific_name_notes | NA |
| sequencer | PromethION |
| state_or_territory | ACT |
| ticket | BPAOPS-1264 |
| voucher_herbarium_catalog_number | 8900857 |
| voucher_herbarium_collector_id | R. Hallett |
| voucher_herbarium_event_date | 1988-12-14 |
| voucher_herbarium_record_number | Hallett 22 |
| voucher_herbarium_recorded_by | R. Hallett |