GAP Illumina short read, Phylogenomics, 79713, Angiosperms353 bait kit
Dataset size is: 167.31 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-07-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1101/20210630_GAP_AGRF_CAGRF21025255_HFVFMDRXY/ |
| ccg_jira_ticket | BPAOPS-1101 |
| data_type | Main dataset (AATOL Stage 1) |
| dataset_id | 83656 |
| date_data_published | 2/7/21 |
| date_of_transfer | 2021-07-01 |
| date_of_transfer_to_archive | 2021-07-01 |
| description | Illumina Short Read |
| dna_extract | Yes |
| dna_extract_pressed_sheet | no |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1101 |
| facility | AGRF |
| family | Asparagaceae |
| flow_cell_id | HFVFMDRXY |
| folder_name | 20210630_GAP_AGRF_CAGRF21025255_HFVFMDRXY |
| genomic_material_associated_references | Nil |
| genomic_material_preparation_date | 2018-04-18 |
| genomic_material_preparation_materials | Qiagen DNeasy Plant Mini Kit, custom library preparation protocol, custom adapters/barcodes |
| genomic_material_preparation_process | QIAGEN DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation |
| genomic_material_preparation_type | gDNA, whole genome shotgun sequencing |
| genomic_material_prepared_by | Bee Gunn | Royal Botanic Garden Melbourne |
| herbarium_code | MEL |
| id_vetting_by | Dr Joanne L. Birch |
| library_construction_protocol | Unknown Library Prep with MyBaits Angiosperm 353 Capture |
| library_id | 83411 |
| living_collections_recorded_by | not applicable |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | Private land |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/79713 |
| sample_submission_date | 2021-05-14 |
| sample_submitter_email | bee.gunn@rbg.vic.gov.au | joanne.birch@unimelb.edu.au |
| sample_submitter_name | Bee Gunn | Joanne L. Birch |
| scientific_name | Romnalda strobilacea |
| scientific_name_authorship | R.J.F.Hend. & Sharpe |
| sequencer | NovaSeq 6000 |
| silica_gel | no |
| silica_gel_pressed_sheet | no |
| ticket | BPAOPS-1101 |
| voucher_herbarium_catalog_number | MEL 2495048A |
| voucher_herbarium_collector_id | Birch, J.L. |
| voucher_herbarium_event_date | 2017-12-15 |
| voucher_herbarium_record_number | 925 |
| voucher_herbarium_recorded_by | Bee Gunn |