GAP Illumina short read, Phylogenomics, 81075, Angiosperms353 bait kit
Dataset size is: 1.00 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-02-17 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1034/20210215_GAP_AGRF_CAGRF21025252_HWHHHDSXY/ |
| ccg_jira_ticket | BPAOPS-1034 |
| data_type | Main dataset (AATOL Stage 1) |
| dataset_id | 83658 |
| date_of_transfer | 2021-02-17 |
| date_of_transfer_to_archive | 2021-03-05 |
| description | Illumina Short Read |
| dna_extract | No - Plant Material sent to AGRF for DNA extraction |
| facility | AGRF |
| family | Rubiaceae |
| flow_cell_id | HWHHHDSXY |
| folder_name | 20210215_GAP_ AGRF_CAGRF21025252_HWHHHDSXY |
| genomic_material_preparation_process | Qiagen DNeasy 96 Plant Kit |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | AGRF (Oct 2020) |
| herbarium_code | BRI |
| id_vetting_by | C.L. Simmons |
| id_vetting_date | 2020-08-27 |
| library_construction_protocol | NEBNext Ultra II DNA with MyBaits Angio353 Capture |
| library_id | 83279 |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | Queensland government employee on state land |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/81075 |
| sample_submission_date | 2020-10-01 |
| sample_submitter_email | gillian.brown@des.qld.gov.au |
| sample_submitter_name | Gillian Brown |
| scientific_name | Pomax umbellata |
| scientific_name_authorship | (Gaertn.) Sol. ex A.Rich. |
| sequencer | NovaSeq 6000 |
| silica_gel | Yes |
| silica_gel_id | CLS20-04 |
| silica_gel_pressed_sheet | independent silica collection made at time of voucher collection |
| ticket | BPAOPS-1034 |
| voucher_herbarium_catalog_number | BRI AQ1016548 |
| voucher_herbarium_collector_id | C.L. Simmons |
| voucher_herbarium_event_date | 2020-07-30 |
| voucher_herbarium_record_number | CLS20-04 |
| voucher_herbarium_recorded_by | BRI |