GAP Illumina short read, Phylogenomics, 80877, Angiosperms353 bait kit (Dataset 1)

Sida hookeriana Miq., Malvaceae, Michelle Waycott

Dataset size is: 276.19 MiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member
Access Control Date 2021-11-18
Access Control Mode date
Sequence Data Type illumina-shortread
analysissoftwareversion NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422
bait_set_name Angiosperms353 bait kit (Dataset 1)
bait_set_reference 10.1093/sysbio/syy086
base_url https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-984/20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX/
ccg_jira_ticket BPAOPS-984
data_type Main dataset (AATOL Stage 1)
dataset_id 83653
date_of_transfer 2020-11-18
date_of_transfer_to_archive 2020-11-19
description Illumina Short Read
dna_extract No - Plant Material sent to AGRF for DNA extraction
facility AGRF
family Malvaceae
flow_cell_id HVM7GDRXX
folder_name 20201116_GAP_AGRF_CAGRF20083582_HVM7GDRXX
genomic_material_preparation_process Qiagen DNeasy 96 Plant Kit
genomic_material_preparation_type gDNA
genomic_material_prepared_by AGRF (Aug-Sep 2020)
herbarium_code AD
id_vetting_date 2020-06-25
library_construction_protocol NEBNext Ultra II DNA with MyBaits Angio353 Capture
library_id 83068
metadata_revision_date 2024-07-11
metadata_revision_filename 2024-07-11_Combined_plant_sample_metadata_forQCIF.xlsx
nagoya_protocol_compliance Pre-Nagoya
nagoya_protocol_permit_number not applicable
project_aim Phylogenomics
run_format 100PE
sample_id 102.100.100/80877
sample_submission_date 2020-08-27
sample_submitter_email michelle.waycott@sa.gov.au
sample_submitter_name Michelle Waycott
scientific_name Sida hookeriana
scientific_name_authorship Miq.
sequencer NovaSeq 6000
silica_gel no
ticket BPAOPS-984
voucher_herbarium_catalog_number AD 125656
voucher_herbarium_collector_id W.R. Barker | R.M. Barker
voucher_herbarium_event_date 2001-12-08
voucher_herbarium_record_number 8361
voucher_herbarium_recorded_by W.R. Barker | R.M. Barker