GAP Illumina short read, Phylogenomics, 80076, Angiosperms353 bait kit
Dataset size is: 1.31 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-04-13 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1060/20210413_GAP_AGRF_H3GYVDSX2/ |
| ccg_jira_ticket | BPAOPS-1060 |
| data_type | Main dataset (AATOL Stage 1) |
| dataset_id | 83654 |
| date_data_published | 15/4/2021 |
| date_of_transfer | 2021-04-13 |
| date_of_transfer_to_archive | 2021-04-13 |
| description | Illumina Short Read |
| dna_extract | No - Plant Material sent to AGRF for DNA extraction |
| facility | AGRF |
| family | Asteraceae |
| flow_cell_id | H3GYVDSX2 |
| folder_name | 20210413_GAP_NGS_AGRF_H3GYVDSX2 |
| genomic_material_preparation_process | Macherey-Nagel NucleoSpin Plant II Kit (single column) |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | AGRF (Nov - Dec 2020) |
| herbarium_code | CANB |
| id_vetting_by | Alexander N. Schmidt-Lebuhn |
| id_vetting_date | 2020-06-01 |
| library_construction_protocol | NEBNext Ultra II DNA with MyBaits Angio353 Capture |
| library_id | 82267 |
| metadata_revision_date | 2024-10-10 |
| metadata_revision_filename | 2024-10-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/80076 |
| sample_submission_date | 2020-11-24 |
| sample_submitter_email | alexander.s-l@csiro.au |
| sample_submitter_name | Alexander Schmidt-Lebuhn |
| scientific_name | Isoetopsis graminifolia |
| scientific_name_authorship | Turcz. |
| sequencer | NovaSeq 6000 |
| silica_gel | Yes |
| silica_gel_id | Alexander N. Schmidt-Lebuhn 1500 |
| silica_gel_pressed_sheet | independent silica collection made at time of voucher collection |
| ticket | BPAOPS-1060 |
| voucher_herbarium_catalog_number | CANB 812996 |
| voucher_herbarium_collector_id | Schmidt-Lebuhn, A.N. |
| voucher_herbarium_event_date | 2012-09-18 |
| voucher_herbarium_record_number | 1500 |