GAP Illumina short read, Phylogenomics, 134481, Angiosperms353 bait kit
Dataset size is: 522.24 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2024-03-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | Illumina BCL2fastq and Sabre |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1365/20230316_GAP_BRF_CSIRO_mini_H5TT7DRX3/ |
| ccg_jira_ticket | BPAOPS-1365 |
| data_type | Pilot (FSP) |
| dataset_id | 134772 |
| date_data_published | 22/3/23 |
| date_of_transfer | 2023-03-21 |
| date_of_transfer_to_archive | 2023-03-22 |
| decimal_latitude_public | -37.0 |
| decimal_longitude_public | 149.9 |
| description | Illumina Short Read |
| dna_extract | No |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1365 |
| external_i5_index | CGCAGACG |
| external_i7_index | GGACTTGG |
| facility | BRF |
| family | Rutaceae |
| flow_cell_id | H5TT7DRX3 |
| folder_name | 20230316_GAP_BRF_CSIRO_mini_H5TT7DRX3 |
| genomic_material_prepared_by | CSIRO |
| herbarium_code | NSW |
| id_vetting_by | S.F McCune | A.E. Orme | Royal Botanic Gardens Sydney |
| id_vetting_date | 2020-12-15 |
| inline_index | GTGCATAC |
| latitude | -37.0 |
| library_construction_protocol | QIAseq FX DNA Library UDI-A Kit (96) |
| library_id | 134581 |
| longitude | 149.9 |
| metadata_revision_date | 2024-10-10 |
| metadata_revision_filename | 2024-10-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | SL100569 |
| project_aim | Phylogenomics |
| run_format | SP flowcell with XP splitter 300 cycles (150 PE) |
| sample_id | 102.100.100/134481 |
| sample_submission_date | 2022-01-14 |
| sample_submitter_email | horel@student.unimelb.edu.au |
| sample_submitter_name | Harvey Orel |
| scientific_name | Zieria formosa |
| scientific_name_authorship | J.D.Briggs & J.A.Armstr. |
| scientific_name_notes | ML note: Mini library (prepared by CSIRO) |
| sequencer | NovaSeq 6000 |
| silica_gel | Yes |
| silica_gel_id | PAM75.1 |
| silica_gel_pressed_sheet | Independent silica collection made at time of voucher collection |
| ticket | BPAOPS-1365 |
| voucher_herbarium_catalog_number | NSW1101007 |
| voucher_herbarium_collector_id | S. McCune |
| voucher_herbarium_event_date | 2020-12-15 |
| voucher_herbarium_record_number | McCune PAM 75 |