GAP Hi-C, Reference genomes, 79639
Dataset size is: 45.37 GiB
Data and Resources
-
79639_LibID83445_HW3MGBGXG_GATCT... Metadata Only FASTQ
-
79639_LibID83445_HW3MGBGXG_GATCT... Metadata Only FASTQ
-
79639_LibID83445_HW3MGBGXG_GATCT... Metadata Only FASTQ
-
79639_LibID83445_HW3MGBGXG_GATCT... Metadata Only FASTQ
-
79639_LibID83445_HW3MGBGXG_GATCT... Metadata Only FASTQ
-
79639_LibID83445_HW3MGBGXG_GATCT... Metadata Only FASTQ
-
79639_LibID83445_HW3MGBGXG_GATCT... Metadata Only FASTQ
-
79639_LibID83445_HW3MGBGXG_GATCT... Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2021-11-03 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| analysissoftwareversion | GenerateFASTQ v1.1.0.64 |
| bait_set_reference | not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-hi-c/BPAOPS-972/ |
| ccg_jira_ticket | BPAOPS-972 |
| data_type | Pilot |
| dataset_id | 83659 |
| date_of_transfer | 2020-11-03 |
| date_of_transfer_to_archive | 2020-11-05 |
| description | Illumina Short Read (Hi-C) |
| dna_extract | not applicable |
| dna_extract_pressed_sheet | not applicable |
| download | https://data.bioplatforms.com/dataset/bpa-gap-hi-c-83445 |
| facility | UNSW |
| family | Proteaceae |
| flow_cell_id | HW3MGBGXG |
| folder_name | 20201103_GAP_UNSW_HW3MGBGXG (Hi-C NextSeq data) |
| genomic_material_associated_references | https://phasegenomics.com/products/proximo/ |
| genomic_material_preparation_date | 2020-09-20 |
| genomic_material_preparation_process | Phase genomics Proximo Plant Hi-C v3.0 |
| genomic_material_preparation_type | Phase genomics Proximo Plant Hi-C v3.0 (kit ID: KB30044102) |
| genomic_material_prepared_by | Tonia Russell (Ramaciotti) |
| herbarium_code | NSW |
| id_vetting_by | Marlien van der Merwe | Herve Sauquet |
| library_construction_protocol | Phase Genomics Plant Hi-C v3.0 |
| library_id | 83445 |
| living_collections_catalog_number | not yet assigned |
| living_collections_material_sample_rna | not applicable |
| living_collections_record_number | T2021-0054 |
| living_collections_recorded_by | no information |
| location_notes | not applicable |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | SL100569 |
| population_group | not applicable |
| preservation_temperature | −80°C (collected in liquid nitrogen) |
| preservation_type | Freezing |
| project_aim | Reference genomes |
| run_format | 2x150bp high output |
| sample_id | 102.100.100/79639 |
| sample_submitter_email | Jason.Bragg@rbgsyd.nsw.gov.au |
| sample_submitter_name | Jason Bragg |
| scientific_name | Telopea speciosissima |
| scientific_name_authorship | (Sm.) R.Br. |
| sequencer | NextSeq |
| silica_gel_pressed_sheet | not applicable |
| ticket | BPAOPS-972 |
| voucher_herbarium_collector_id | Jason Bragg |
| voucher_herbarium_record_number | NSW1024214 |