GAP ddRAD, Conservation genomics, Dataset ID 83672
Dataset size is: 52.75 GiB
Data and Resources
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83672_H5FWTDRXY_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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83672_H5FWTDRXY_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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83672_H5FWTDRXY_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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83672_H5FWTDRXY_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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83672_H5FWTDRXY_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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GAP_NGS_H5FWTDRXY_library_metada... Metadata Only XLSX
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83672_H5FWTDRXY_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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83672_H5FWTDRXY_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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83672_H5FWTDRXY_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-06-11 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| bait_set_name | Not applicable |
| bait_set_reference | Not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ddrad/BPAOPS-1083/AGRF_GAP_H5FWTDRXY_83672/ |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83672 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1083 |
| date_of_transfer | 2021-06-11 |
| date_of_transfer_to_archive | 2021-06-11 |
| description | ddRAD |
| dna_extract | Yes |
| dna_extract_pressed_sheet | Not applicable |
| experimental_design | PstI and NlaIII |
| family | Proteaceae |
| flowcell_id | H5FWTDRXY |
| folder_name | AGRF_GAP_H5FWTDRXY_83672 |
| genomic_material_preparation_date | 2021-01-01 |
| genomic_material_preparation_process | CTAB |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | Nicola Delnevo |
| id_vetting_by | Ryonen Butcher |
| id_vetting_date | 2020-11-01 |
| library_pcr_cycles | 11 |
| library_pcr_reps | 7 |
| library_prep_date | 2021-05-05 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_prepared_by | Amy Longva |
| library_type | ddRAD_AGRF |
| living_collections_event_date | 2020-10-01 |
| living_collections_recorded_by | Ryonen Butcher |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| n_libraries_pooled | 4 |
| nagoya_protocol_compliance | Yes |
| preservation_date_begin | 2020-11-01 |
| preservation_temperature | Room Temp | -4°C |
| preservation_type | Silica (leaf) | Freezing (DNA) |
| project_aim | Conservation genomics |
| sample_submission_date | 2021-02-18 |
| sample_submitter_email | rachel.binks@dbca.wa.gov.au |
| sample_submitter_name | Rachel Binks |
| scientific_name | Synaphea acutiloba , Synaphea aff. gracillima , Synaphea aff. odocoileops , Synaphea aff. petiolaris , Synaphea gracillima , Synaphea odocoileops , Synaphea petiolaris subsp. nov. , Synaphea petiolaris subsp. petiolaris , Synaphea petiolaris subsp. simplex , Synaphea petiolaris subsp. triloba , Synaphea sp. Fairbridge Farm , Synaphea sp. Pinjarra , Synaphea sp. Pinjarra Plain , Synaphea sp. Serpentine (G.R. Brand 103) , Synaphea stenoloba |
| sequence_length | 150 SE |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | illumina NovaSeq 6000 |
| silica_gel | Yes |
| silica_gel_id | Not applicable |
| silica_gel_pressed_sheet | No |
| software_version | Data not demultiplexed |
| species_complex | Synaphea stenoloba species complex |
| state_or_territory | Western Australia |
| ticket | BPAOPS-1083 |