GAP ddRAD, Conservation genomics, Dataset ID 83669
Dataset size is: 58.70 GiB
Data and Resources
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83669_HGLMHDRX2_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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83669_HGLMHDRX2_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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83669_HGLMHDRX2_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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GAP_NGS_HGLMHDRX2_library_metada... Metadata Only XLSX
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83669_HGLMHDRX2_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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83669_HGLMHDRX2_TGACCA_L001_R1.fastq.gz Metadata Only FASTQ
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83669_HGLMHDRX2_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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83669_HGLMHDRX2_TGACCA_L002_R1.fastq.gz Metadata Only FASTQ
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83669_HGLMHDRX2_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-08-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| bait_set_name | Not applicable |
| bait_set_reference | Not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ddrad/BPAOPS-1312/AGRF_GAP_HGLMHDRX2_83669/ |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83669 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1312 |
| date_of_transfer | 2022-08-16 |
| date_of_transfer_to_archive | 2022-08-16 |
| description | ddRAD |
| experimental_design | PstI & HpyCH4IV |
| family | Simaroubaceae |
| flowcell_id | HGLMHDRX2 |
| folder_name | AGRF_GAP_HGLMHDRX2_83669 |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | AGRF (Dec 2021) |
| library_pcr_cycles | 11 |
| library_pcr_reps | 7 |
| library_prep_date | 2022-08-10 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_prepared_by | Amy Longva |
| library_type | ddRAD |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| n_libraries_pooled | 4 |
| nagoya_protocol_compliance | Yes |
| project_aim | Conservation genomics |
| sample_submission_date | 2021-12-09 |
| sample_submitter_email | laura.simmons@rbg.vic.gov.au |
| sample_submitter_name | Laura Simmons |
| scientific_name | Samadera bidwillii , Samadera sp. , Samadera sp. Barong (B.Gray 742) Qld Herbarium , Samadera sp. Mary River (I.D.Cowie 1454) , Samadera baileyana , Samadera sp. Dam Creek (T.S.Ryan 1006) Qld Herbarium , Samadera sp. Kennedy River (J.R.Clarkson 5645) Qld Herbarium , Samadera sp. Moonee Creek (J.King s.n. Nov. 1949) NSW Herbarium , Samadera sp. Mt Goonanaman (J.Randall 738) Qld Herbarium , Samadera sp. Mt Nardi (B.L.Walker AQ330746) Qld Herbarium , Samadera sp. St Mary (P.Grimshaw+ PG2159) Qld Herbarium , Samadera sp. Tozer Range (L.J.Brass 19393) Qld Herbarium |
| sequence_length | 150 bp |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | Illumina Nova Seq |
| species_complex | Samadera bidwillii species complex |
| ticket | BPAOPS-1312 |