GAP ddRAD, Conservation genomics, Dataset ID 83668
Dataset size is: 53.61 GiB
Data and Resources
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83668_HNH57DRXY_CGATGT_L002_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_TGACCA_L002_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_TGACCA_L001_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_CGATGT_L001_R1.fastq.gz Metadata Only FASTQ
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GAP_NGS_HNH57DRXY_library_metada... Metadata Only XLSX
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83668_HNH57DRXY_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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83668_HNH57DRXY_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-12-10 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ddrad/BPAOPS-1179/AGRF_GAP_HNH57DRXY_83668/ |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83668 |
| dataset_url | https://data.bioplatforms.com/dataset/bpa-gap-genomics-ddrad-102_100_100_83668-hnh57drxy |
| date_of_transfer | 2021-12-10 |
| date_of_transfer_to_archive | 2021-12-11 |
| description | ddRAD |
| experimental_design | PstI and MseI |
| family | Fabaceae |
| flowcell_id | HNH57DRXY |
| folder_name | AGRF_GAP_HNH57DRXY_83668 |
| genomic_material_preparation_type | gDNA |
| herbarium_code | BRI |
| id_vetting_by | M.T.Mathieson |
| library_pcr_cycles | 11 |
| library_pcr_reps | 7 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_type | ddRAD_AGRF |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| n_libraries_pooled | 6 |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | Landowner permission obtained |
| project_aim | Conservation genomics |
| sample_submitter_email | laura.simmons@rbg.vic.gov.au |
| sample_submitter_name | Laura Simmons |
| scientific_name | Gompholobium aff. nitidum , Gompholobium nitidum , Gompholobium pinnatum , Gompholobium sp. Dave's Creek (P.I.Forster+ PIF15979) Qld Herbarium , Gompholobium sp. Point Archer (J.Wrigley+ NQ1301) Qld Herbarium |
| sequence_length | 150 SE |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | illumina NovaSeq 6000 |
| silica_gel | Yes |
| silica_gel_pressed_sheet | No |
| species_complex | Gompholobium species in Queensland |
| state_or_territory | QLD |
| ticket | BPAOPS-1179 |
| voucher_herbarium_recorded_by | BRI |