GAP ddRAD, Conservation genomics, Dataset ID 83667
Dataset size is: 61.08 GiB
Data and Resources
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83667_HFTHLDRXY_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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83667_HFTHLDRXY_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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83667_HFTHLDRXY_ACAGTG_L002_R1.fastq.gz Metadata Only FASTQ
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83667_HFTHLDRXY_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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83667_HFTHLDRXY_GTGAAA_L002_R1.fastq.gz Metadata Only FASTQ
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83667_HFTHLDRXY_ACAGTG_L001_R1.fastq.gz Metadata Only FASTQ
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GAP_NGS_HFTHLDRXY_library_metada... Metadata Only XLSX
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83667_HFTHLDRXY_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
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83667_HFTHLDRXY_GTGAAA_L001_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-07-12 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| bait_set_name | Not applicable |
| bait_set_reference | Not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ddrad/BPAOPS-1110/AGRF_GAP_HFTHLDRXY_83667/ |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83667 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1110 |
| date_of_transfer | 2021-07-12 |
| date_of_transfer_to_archive | 2021-07-13 |
| description | ddRAD |
| dna_extract | No - Plant Material sent to AGRF for DNA extraction |
| dna_extract_pressed_sheet | No |
| experimental_design | PstI and MseI |
| family | Fabaceae |
| flowcell_id | HFTHLDRXY |
| folder_name | AGRF_GAP_HFTHLDRXY_83667 |
| genomic_material_preparation_date | 2021-04-01 |
| genomic_material_preparation_process | Macherey-Nagel NucleoSpin Plant II Kit (single column) |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | AGRF |
| herbarium_code | BRI |
| id_vetting_by | Halford, J.J. |
| id_vetting_date | 2021-02-12 |
| library_pcr_cycles | 11 |
| library_pcr_reps | 7 |
| library_prep_date | 2021-06-21 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_prepared_by | Jade Cooke |
| library_type | ddRAD_AGRF |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| n_libraries_pooled | 4 |
| project_aim | Conservation genomics |
| sample_submission_date | 2021-03-26 |
| sample_submitter_email | laura.simmons@des.qld.gov.au |
| sample_submitter_name | Laura Simmons |
| scientific_name | Cassia brewsteri , Cassia fistula , Cassia javanica , Cassia marksiana , Cassia queenslandica , Cassia sp. Kalpowar (D.G.Fell+ DF2769) Qld Herbarium , Cassia sp. Paluma Range (G.Sankowsky+ 450) Qld Herbarium , Cassia tomentella |
| sequence_length | 150 SE |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | illumina NovaSeq 6000 |
| silica_gel_id | Not applicable |
| species_complex | Cassia species complex |
| ticket | BPAOPS-1110 |
| voucher_herbarium_recorded_by | BRI |