GAP ddRAD, Conservation genomics, Dataset ID 83662
Dataset size is: 9.39 GiB
Data and Resources
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GAP_NGS_H3YW3AFX3_library_metada... Metadata Only XLSX
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83662_H3YW3AFX3_GCCAAT_L003_R1.fastq.gz Metadata Only FASTQ
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83662_H3YW3AFX3_CTTGTA_L004_R1.fastq.gz Metadata Only FASTQ
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83662_H3YW3AFX3_CTTGTA_L002_R1.fastq.gz Metadata Only FASTQ
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83662_H3YW3AFX3_CTTGTA_L003_R1.fastq.gz Metadata Only FASTQ
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83662_H3YW3AFX3_GCCAAT_L004_R1.fastq.gz Metadata Only FASTQ
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83662_H3YW3AFX3_GCCAAT_L001_R1.fastq.gz Metadata Only FASTQ
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83662_H3YW3AFX3_GCCAAT_L002_R1.fastq.gz Metadata Only FASTQ
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83662_H3YW3AFX3_CTTGTA_L001_R1.fastq.gz Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-07-26 |
| Access Control Mode | date |
| Sequence Data Type | illumina-ddrad |
| bait_set_name | Not applicable |
| bait_set_reference | Not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/ddrad/BPAOPS-1119/AGRF_GAP_H3YW3AFX3_83662/ |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 102.100.100/83662 |
| dataset_url | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1119 |
| date_of_transfer | 2021-07-26 |
| date_of_transfer_to_archive | 2021-07-26 |
| description | ddRAD |
| dna_extract | Yes |
| experimental_design | PstI and NlaIII |
| family | Rutaceae |
| flowcell_id | H3YW3AFX3 |
| folder_name | AGRF_GAP_H3YW3AFX3_83662 |
| genomic_material_preparation_date | 2021-05-20 |
| genomic_material_preparation_materials | STE:CTAB/chloroform; isopropanol:NaAC precipitation. |
| genomic_material_preparation_process | STE:CTAB/chloroform; isopropanol:NaAC precipitation. |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | Harvey Orel |
| library_pcr_cycles | 11 |
| library_pcr_reps | 7 |
| library_prep_date | 2021-07-14 |
| library_prep_method | ddRAD (based on Peterson et al 2012) |
| library_prepared_by | Jade Cooke |
| library_type | ddRAD_AGRF |
| metadata_revision_date | 2023-12-08 |
| metadata_revision_filename | 2023-12-08_Combined_plant_sample_metadata_forQCIF.xlsx |
| n_libraries_pooled | 2 |
| nagoya_protocol_compliance | Yes |
| preservation_temperature | Ambient; 4 °C. |
| preservation_type | Leaf material in silica; DNA extract frozen. |
| project_aim | Conservation genomics |
| sample_submission_date | 2021-05-26 |
| sample_submitter_email | mbayly@unimelb.edu.au | Harvey.orel@unimelb.edu.au |
| sample_submitter_name | Mike Bayly | Harvey Orel | The University of Melbourne |
| scientific_name | Zieria aff. tuberculata , Zieria arborescens , Zieria baeuerlenii , Zieria buxijugum , Zieria collina , Zieria eungellaensis , Zieria formosa , Zieria granulata , Zieria littoralis , Zieria obcordata , Zieria parrisiae , Zieria tuberculata , Zieria verrucosa |
| sequence_length | 150 SE |
| sequencing_facility | AGRF Melbourne |
| sequencing_platform | illumina NextSeq 500 |
| silica_gel | Yes |
| species_complex | Zieria species complex |
| ticket | BPAOPS-1119 |