Australian native magic mushroom, Reference Genome, Illumina-shortread, Hyphae
Dataset size is: 6.74 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
| Access Control Date | 2024-01-30 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| ancillary_notes | NA |
| associated_media | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/illumina-shortread/BPAOPS-1356/20230130_FUN_AGRF_HNGM7DSX5/ |
| bioplatforms_dataset_id | 102.100.100/467793 |
| bioplatforms_library_id | 102.100.100/465877 |
| bioplatforms_project | Fungi |
| bioplatforms_sample_id | 102.100.100/463878 |
| ccg_jira_ticket | BPAOPS-1356 |
| class | Agaricomycetes |
| collector | Snu |
| common_name | Australian native magic mushroom |
| country | Australia |
| data_context | Reference Genome |
| data_type | Illumina-shortread |
| date_of_transfer | 2023-01-30 |
| description | Sequencing of 100 specimens of Psilocybin mushrooms |
| download | 31/01/2023 |
| facility_project_code | CAGRF220811578 |
| facility_sample_id | 13094-100 |
| family | Hymenogasteraceae |
| flow_cell_id | library |
| flowcell_id | HNGM7DSX5 |
| flowcell_type | S4-300 |
| folder_name | 202230130_FUN_AGRF_HNGM7DSX5 |
| genotypic_sex | NA |
| genus | Psilocybe |
| health_state | unknown |
| insert_size_range | 350 bp |
| library_construction_protocol | Illumina DNA Prep M |
| library_id | 465877 |
| library_index_id | UDP0182-F |
| library_index_id_dual | UDP0182-R |
| library_index_seq_dual | AAGTTGACAA |
| library_index_sequence | AATTCTTGGA |
| library_layout | Paired-End |
| library_location | AGRF Melbourne |
| library_ng_ul | 1.14 |
| library_pcr_cycles | 12.0 |
| library_prep_date | 2022-11-17 |
| library_prepared_by | Katrina Karapanos |
| library_selection | Enzymatic Tagementation |
| library_source | Genome DNA |
| library_strategy | Whole Genome Sequencing |
| library_type | Illumina-shortread |
| lifestage | NA |
| metadata_revision_date | 2023-12-21 |
| metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_NOLATLON.xlsx |
| method_sex_determination | NA |
| note | This is a reupload of 202221129_FUN_AGRF_HNGM7DSX5 with re-aligned sample labels |
| order | Agaricales |
| phenotypic_sex | NA |
| phylum | Basidiomycota |
| project_lead | Alistair McTaggart |
| sample_collection_type | Culture |
| sample_custodian | Alistair McTaggart |
| sample_id | 45-5 |
| sample_id_description | BRIP75406 |
| sample_type | tissue sample |
| scientific_name | Psilocybe subaeruginosa |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | V1.5 |
| sequencing_model | 6000.0 |
| sequencing_platform | NovaSeq |
| sex_certainty | NA |
| species | subaeruginosa |
| specimen_custodian | Alistair McTaggart |
| specimen_id | Psilocybe subaeruginosa |
| specimen_id_description | NA |
| state_or_region | Victoria |
| taxon_id | 181776.0 |
| taxonomic_group | Fungi |
| ticket | BPAOPS-1356 |
| tissue | Hyphae |
| type_status | unknown |
| work_order | 21001 |