Indian Backwater Oyster, Reference genome, PacBio-HiFi, gill
Dataset size is: 15.97 GiB
This dataset is currently under a short embargo period until June 4, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:cipps005 |
| Access Control Date | 2025-06-04 |
| Access Control Mode | date |
| Sequence Data Type | PacBio-HiFi |
| ala_specimen_url | https://bie.ala.org.au/species/https://biodiversity.org.au/afd/taxa/cd2cabb8-0364-49e7-81b1-5e48c3e264dd |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 13.1.0.221970 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/cipps_staging/pacbio-hifi/BPAOPS-1594/20240603_CIPPS_AGRF_CAGRF24040033_m84073_240503_110849_s4/ |
| bioplatforms_library_id | 102.100.100/417523 |
| bioplatforms_project_code | CIPPS_oyster |
| bioplatforms_sample_id | 102.100.100/415521 |
| cell_postion | D01 |
| class | Bivalvua |
| collection_date | 2024-02-24 |
| collector | Joy Becker |
| common_name | Indian Backwater Oyster |
| country | Sri Lanka |
| data_context | Reference genome |
| data_custodian | Joy Becker |
| date_of_transfer | 2024-06-04 |
| date_of_transfer_to_archive | 2024-06-05 |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF24040033 |
| facility_sample_id | 415521.0 |
| family | Ostreidae |
| file_type | BAM |
| flowcell_id | m84073_240503_110849_s4 |
| flowcell_type | SMRT Cell 25M |
| genotypic_sex | not determined |
| genus | Crassostrea |
| health_state | unknown |
| insert_size_range | 9500.0 |
| institution_name | The university of Sydney |
| library_comments | NA |
| library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 2.0 |
| library_index_id | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 250pM |
| library_oligo_sequence | NA |
| library_pcr_cycles | NA |
| library_pcr_reps | NA |
| library_prep_date | 2024-04-02 |
| library_prepared_by | Trent Peters |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| material_conc_ng_ul | 293.0 |
| material_extracted_by | Luke Silver |
| material_extraction_date | 2024-03-27 |
| material_extraction_method | Circulomics |
| material_extraction_type | DNA |
| metadata_revision_date | 2024-06-11 |
| metadata_revision_filename | 20240611_CIPPS_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| movie_length | 30Hrs |
| n_libraries_pooled | 1.0 |
| order | Ostreoida |
| phenotypic_sex | not determined |
| phylum | Mollusca |
| prior_genetics | NA |
| sample_custodian | Joy Becker |
| scientific_name | Crassostrea bilineata |
| scientific_name_authorship | NA |
| scientific_name_note | NA |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | Revio sequencing plate |
| sequencing_model | PacBio Revio |
| sequencing_platform | PACBIO_SMRT |
| species | bilineata |
| specimen_id | 1-2GLB1 |
| specimen_id_description | gill |
| subspecies | NA |
| taxonomic_group | Mollusk |
| ticket | BPAOPS-1594 |
| tissue_number | 1-2_GillB1 |
| tissue_preservation_temperature | ethanol |
| tissue_type | gill |
| wild_captive | Wild |
| work_order | CIPPS |