Transcriptome
Dataset size is: 11.16 GiB
This dataset is currently under a short embargo period until August 23, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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417567_CIPPS_UNSW_22KTT3LT3_ACTC... Metadata Only FASTQ
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417567_CIPPS_UNSW_22KTT3LT3_ACTC... Metadata Only FASTQ
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417567_CIPPS_UNSW_22KTT3LT3_ACTC... Metadata Only FASTQ
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417567_CIPPS_UNSW_22KTT3LT3_ACTC... Metadata Only FASTQ
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417567_CIPPS_UNSW_22KTT3LT3_ACTC... Metadata Only FASTQ
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417567_CIPPS_UNSW_22KTT3LT3_ACTC... Metadata Only FASTQ
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417567_CIPPS_UNSW_22KTT3LT3_ACTC... Metadata Only FASTQ
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417567_CIPPS_UNSW_22KTT3LT3_ACTC... Metadata Only FASTQ
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:cipps007 |
| Access Control Date | 2025-08-23 |
| Access Control Mode | date |
| Sequence Data Type | illumina-transcriptomics |
| analysis_software | BCLConvert |
| analysis_software_version | 4.1.7 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/cipps_staging/illumina-shortread/BPAOPS-1659/20240708_CIPPS_UNSW_22KTT3LT3/ |
| bioplatforms_dataset_id | 102.100.100/419490 |
| bioplatforms_library_id | 102.100.100/417567 |
| bioplatforms_project | CIPPS |
| bioplatforms_project_code | CIPPS_corroboree |
| bioplatforms_sample_id | 102.100.100/415565 |
| data_context | Transcriptome |
| data_custodian | Carolyn Hogg |
| date_of_transfer | 2024-08-23 |
| date_of_transfer_to_archive | 2024-09-03 |
| facility_project_code | Q0014487 |
| facility_sample_id | PEE13817A42 |
| file_type | fastq.gz |
| flowcell_id | 22KTT3LT3 |
| flowcell_type | NovaSeq X 10B |
| genus | Pseudophryne |
| insert_size_range | 150 PE |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 417567 |
| library_index_id | UDP0041 |
| library_index_sequence | ACTCGGCAAT-GACAACTGAA |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 35.6 |
| library_pcr_cycles | 12 |
| library_pcr_reps | 1 |
| library_prep_date | 2024-06-25 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | Oligo-dT |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | illumina-transcriptomics |
| n_libraries_pooled | 49.0 |
| sequencing_facility | Ramaciotti Centre for Genomics |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| species | corroboree |
| specimen_id | psco_581_vskin_neg |
| ticket | BPAOPS-1659 |
| tissue_number | psco_581_ventral_skin_neg |
| work_order | 14070 |