Dugong, Transcriptome, blood

Dugongidae, Dugonginae dugon, F_MB22251, Mammal, Project Lead: Carolyn Hogg

Dataset size is: 15.41 GiB

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Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:365:cipps003
Access Control Date 2024-04-17
Access Control Mode date
Sequence Data Type illumina-transcriptomics
access_rights open access
ala_specimen_url NA
analysis_software Bcl2fastq2
analysis_software_version v2.20
ancillary_notes NA
barcode_id NA
base_url https://downloads-qcif.bioplatforms.com/bpa/cipps_staging/illumina-shortread/BPAOPS-1492/20230406_CIPPS_UNSW_H3MCVDSX7/
bioplatforms_dataset_id 102.100.100/419486
bioplatforms_library_id 102.100.100/417505
bioplatforms_project CIPPS
bioplatforms_project_code CIPPS_dugong
bioplatforms_sample_id 102.100.100/415503
cell_postion n/a
class Mammalia
collection_date 2022-08-11
collector Janet Lanyon
common_name Dugong
country Australia
data_context Transcriptome
data_custodian Carolyn Hogg
date_of_transfer 2023-04-18
date_of_transfer_to_archive 2023-04-19
dna_treatment n/a
facility_project_code Q0010809
facility_sample_id BAT11852A21
family Dugongidae
file_type fastq.gz
flowcell_id H3MCVDSX7
flowcell_type NovaSeq S4
genotypic_sex not determined
genus Dugonginae
insert_size_range 150 PE
institution_name The University of Sydney
library_construction_protocol Illumina Stranded mRNA Prep Ligation
library_id 417505
library_index_id_dual UDP0309
library_index_seq_dual TTAAGACAAG-GGCTTAATTG
library_layout paired end
library_location Ramaciotti Centre for Genomics
library_ng_ul 15.0
library_pcr_cycles 13
library_pcr_reps 1
library_prep_date 2023-04-17
library_prepared_by Ramaciotti Centre for Genomics
library_selection PolyA
library_source TRANSCRIPTOMIC
library_strategy RNA-Seq
library_type Illumina-transcriptomics
location_text Moreton Bay, QLD
material_conc_ng_ul 13.9
material_extracted_by Kimberley Batley
material_extraction_date 2023-02-08
material_extraction_method Rneasy protect animal blood kit
material_extraction_type RNA
metadata_revision_date 2023-10-19
metadata_revision_filename 20231019_CIPPS_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx
movie_length n/a
n_libraries_pooled 23.0
order Sirenia
phenotypic_sex Female
phylum Chordata
prior_genetics NA
sample_custodian Carolyn Hogg
sample_quality High
sample_type Tissue sample
scientific_name Dugong dugon
scientific_name_authorship NA
scientific_name_note NA
sequencing_facility Ramaciotti Centre for Genomics
sequencing_kit_chemistry_version NovaSeq v1.5
sequencing_model Illumina NovaSeq 6000
sequencing_platform ILLUMINA
species dugon
specimen_id F_MB22251
specimen_id_description Sample number - UQ
state_or_region Queensland
subspecies NA
taxon_id 29137.0
taxonomic_group Mammal
ticket BPAOPS-1492
tissue_collection The University of Sydney
tissue_collection_type University
tissue_number MB22251_blood
tissue_preservation RNA protect
tissue_preservation_temperature -80.0
tissue_type blood
wild_captive wild
work_order 10809