koala, Transcriptome, pouch
Dataset size is: 16.84 GiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:cipps001 |
| Access Control Date | 2024-04-17 |
| Access Control Mode | date |
| Sequence Data Type | illumina-transcriptomics |
| access_rights | open access |
| ala_specimen_url | NA |
| analysis_software | Bcl2fastq2 |
| analysis_software_version | v2.20 |
| ancillary_notes | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/cipps_staging/illumina-shortread/BPAOPS-1492/20230406_CIPPS_UNSW_H3MCVDSX7/ |
| bioplatforms_dataset_id | 102.100.100/419484 |
| bioplatforms_library_id | 102.100.100/417496 |
| bioplatforms_project | CIPPS |
| bioplatforms_project_code | CIPPS_koala |
| bioplatforms_sample_id | 102.100.100/415494 |
| cell_postion | n/a |
| class | Mammalia |
| collection_date | 2022-01-28 |
| collector | Astrid Van Aggden |
| common_name | koala |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Carolyn Hogg |
| date_of_transfer | 2023-04-18 |
| date_of_transfer_to_archive | 2023-04-19 |
| dna_treatment | n/a |
| facility_project_code | Q0010809 |
| facility_sample_id | BAT11852A12 |
| family | Phascolarctidae |
| file_type | fastq.gz |
| flowcell_id | H3MCVDSX7 |
| flowcell_type | NovaSeq S4 |
| genotypic_sex | not determined |
| genus | Phascolarctos |
| health_state | Emaciated - chlamydia disease (very advanced). Adhesions +++, pyometria |
| insert_size_range | 150 PE |
| institution_name | The University of Sydney |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 417496 |
| library_index_id_dual | UDP0300 |
| library_index_seq_dual | GGTCCGCTTC-CTCACACAAG |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 23.8 |
| library_pcr_cycles | 13 |
| library_pcr_reps | 1 |
| library_prep_date | 2023-04-08 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | PolyA |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | 12+ |
| location_text | Port Macquarie, NSW |
| material_conc_ng_ul | 137.0 |
| material_extracted_by | Kimberley Batley |
| material_extraction_date | 2022-11-01 |
| material_extraction_method | Rneasy mini kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-10-19 |
| metadata_revision_filename | 20231019_CIPPS_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | Examination |
| movie_length | n/a |
| n_libraries_pooled | 23.0 |
| order | Diprotodontia |
| phenotypic_sex | Female |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Carolyn Hogg |
| sample_quality | Good |
| sample_type | Tissue sample |
| scientific_name | Phascolarctos cinereus |
| scientific_name_authorship | NA |
| scientific_name_note | NA |
| sequencing_facility | Ramaciotti Centre for Genomics |
| sequencing_kit_chemistry_version | NovaSeq v1.5 |
| sequencing_model | Illumina NovaSeq 6000 |
| sequencing_platform | ILLUMINA |
| sex_certainty | Certain |
| species | cinereus |
| specimen_id | TIRR Bottomly Polts_p |
| specimen_id_description | PMKH |
| state_or_region | New South Wales |
| subspecies | NA |
| taxon_id | 38626.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1492 |
| tissue_collection | The University of Sydney |
| tissue_collection_type | Hospital |
| tissue_number | TIRR Bottomly Polts_pouch |
| tissue_preservation | RNAlater |
| tissue_preservation_temperature | -80.0 |
| tissue_type | pouch |
| wild_captive | wild |
| work_order | 10809 |