BASE Metagenomics 9530_1

Chowilla, Metagenomics

Dataset size is: 3.82 GiB

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2016-02-18
Access Control Mode date
Sequence Data Type illumina-shortread
am_environment Soil
ammonium_nitrogen_wt (mg/kg) 11.0
ammonium_nitrogen_wt_meth meth_2.1
analysis_software_version 1.8.2
archive_ingestion_date 2015-11-20
bioplatforms_project Biome of Australia Soil Environments (BASE)
biotic_relationship Free-living
boron_hot_cacl2 (mg/kg) 1.18
boron_hot_cacl2_meth meth_2.1
clay (%) 43.5
clay_meth meth_2.1
coarse_sand (%) 3.65
coarse_sand_meth meth_2.1
collection_date 2013-03-29T00:00:00
color LTGR
conductivity (dS/m) 0.964
conductivity_meth meth_2.1
data_generated 2015-11-20
data_type Metagenomics
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_url https://downloads.bioplatforms.com/bpa/base/raw/metagenomics/agrf/BRLOPS-738/20151120_AGRF_BPA_BASE_HFLF3BCXX/
date_of_transfer 2015-11-20
depth (m) 0.0
depth_lower (m) 0.1
depth_upper (m) 0.0
description BASE metagenomics
dtpa_copper (mg/kg) 2.88
dtpa_copper_meth meth_2.1
dtpa_iron (mg/kg) 60.28
dtpa_iron_meth meth_2.1
dtpa_manganese (mg/kg) 32.31
dtpa_manganese_meth meth_2.1
dtpa_zinc (mg/kg) 1.33
dtpa_zinc_meth meth_2.1
elev (m) 62.0
env_broad_scale 1 Conservation and Natural Environments
env_local_scale 1.1.6 Protected landscape
env_medium Soil [ENVO_00001998]
exc_aluminium (meq/100g) 0.037
exc_aluminium_meth meth_2.1
exc_calcium (meq/100g) 8.89
exc_calcium_meth meth_2.1
exc_magnesium (meq/100g) 10.44
exc_magnesium_meth meth_2.1
exc_potassium (meq/100g) 0.84
exc_potassium_meth meth_2.1
exc_sodium (meq/100g) 3.75
exc_sodium_meth meth_2.1
facility AGRF
fine_sand (%) 25.5
fine_sand_meth meth_2.1
flow_id HFLF3BCXX
folder_name 20151120_AGRF_BPA_BASE_HFLF3BCXX
general_env_feature Arid
geo_loc_name Australia:South Australia [GAZ_00002791]
gravel (%) 15.0
gravel_meth meth_2.1
hyperspectral_analysis DOI 10.5281/zenodo.6265730
hyperspectral_analysis_meth meth_2.26
insert_size_range 550bp
lat_lon (decimal_degrees) -33.9569 140.7186
latitude (decimal_degrees) -33.9569
library_construction_protocol TruSeq PCR Free DNA
local_class Calcarosol
local_class_meth meth_2.27
longitude (decimal_degrees) 140.7186
ncbi_bioproject_accession PRJNA317932
ncbi_bioproject_accession_number PRJNA317932
ncbi_biosample_accession SAMN04874060
ncbi_biosample_accession_number SAMN04874060
nitrate_nitrogen (mg/kg) 16.0
nitrate_nitrogen_meth meth_2.1
nucl_acid_ext meth_3.1.1
organic_carbon (%) 1.65
organic_carbon_meth meth_2.1
ph 6.1
ph_meth meth_2.1
ph_solid_h2o 6.4
ph_solid_h2o_meth meth_2.1
phosphorus_colwell (mg/kg) 33.0
phosphorus_colwell_meth meth_2.1
potassium_colwell (mg/kg) 328.0
potassium_colwell_meth meth_2.1
read_length 150bp
sample_database_file AM_db_v4.2_202412051535.db
sample_extraction_id 9530_1
sample_id 102.100.100/9530
sample_metadata_ingest_date 2021-04-23 11:13:48
sample_metadata_ingest_file BASE_NEW_CKAN_Curated_depth_xlsx
sample_metadata_update_history soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; AM_visNIR_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx;
sample_site_location_description Chowilla
sample_submission_date 2015-11-20
sample_type Soil
sand (%) 29.15
sand_meth meth_2.1
sequencer HiSeq 2500
silt (%) 27.35
silt_meth meth_2.1
slope_aspect (direction_or_degrees) 262.0
slope_gradient (%) 1.0
source_mat_id 102.100.100/9530
store_cond frozen
sulphur (mg/kg) 110.7
sulphur_meth meth_2.1
texture 2.0
texture_meth meth_2.1
ticket BRLOPS-738
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/9530
utc_date_sampled 2013-03-29
vegetation_type Woodland
water_content (%) 1.209850107
water_content_soil_meth meth_2.1